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蘑菇形成真菌裂褶菌菌株之间表现出高度的表型和基因型可塑性。

High phenotypic and genotypic plasticity among strains of the mushroom-forming fungus Schizophyllum commune.

机构信息

Microbiology, Department of Biology, Faculty of Science, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands.

U.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA.

出版信息

Fungal Genet Biol. 2024 Aug;173:103913. doi: 10.1016/j.fgb.2024.103913. Epub 2024 Jul 14.

Abstract

Schizophyllum commune is a mushroom-forming fungus notable for its distinctive fruiting bodies with split gills. It is used as a model organism to study mushroom development, lignocellulose degradation and mating type loci. It is a hypervariable species with considerable genetic and phenotypic diversity between the strains. In this study, we systematically phenotyped 16 dikaryotic strains for aspects of mushroom development and 18 monokaryotic strains for lignocellulose degradation. There was considerable heterogeneity among the strains regarding these phenotypes. The majority of the strains developed mushrooms with varying morphologies, although some strains only grew vegetatively under the tested conditions. Growth on various carbon sources showed strain-specific profiles. The genomes of seven monokaryotic strains were sequenced and analyzed together with six previously published genome sequences. Moreover, the related species Schizophyllum fasciatum was sequenced. Although there was considerable genetic variation between the genome assemblies, the genes related to mushroom formation and lignocellulose degradation were well conserved. These sequenced genomes, in combination with the high phenotypic diversity, will provide a solid basis for functional genomics analyses of the strains of S. commune.

摘要

糙皮侧耳是一种形成蘑菇的真菌,其特征性的可分裂菌褶使其与众不同。它被用作研究蘑菇发育、木质纤维素降解和交配型基因座的模式生物。它是一个高度变异的物种,菌株间具有相当大的遗传和表型多样性。在这项研究中,我们系统地表型分析了 16 个双核菌株的蘑菇发育方面,以及 18 个单核菌株的木质纤维素降解方面。这些表型在菌株间存在相当大的异质性。大多数菌株发育出具有不同形态的蘑菇,尽管一些菌株在测试条件下仅生长为营养体。在各种碳源上的生长表现出菌株特异性的特征。7 个单核菌株的基因组被测序,并与之前发表的 6 个基因组序列一起进行了分析。此外,还对相关物种裂褶菌进行了测序。尽管基因组组装之间存在相当大的遗传变异,但与蘑菇形成和木质纤维素降解相关的基因得到了很好的保守。这些测序的基因组,加上高度的表型多样性,将为糙皮侧耳菌株的功能基因组学分析提供坚实的基础。

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