局部管道：一种用于低覆盖度全基因组测序群体基因组学的自动化管道。
loco-pipe: an automated pipeline for population genomics with low-coverage whole-genome sequencing.
作者信息
Zhou Zehua T, Owens Gregory L, Larson Wesley A, Lou Runyang Nicolas, Sudmant Peter H
机构信息
Department of Integrative Biology, University of California Berkeley, Berkeley, CA 94720, USA.
Department of Biology, University of Victoria, Victoria, BC V8P 5C2, Canada.
出版信息
Bioinform Adv. 2024 Jul 11;4(1):vbae098. doi: 10.1093/bioadv/vbae098. eCollection 2024.
SUMMARY
We developed loco-pipe, a Snakemake pipeline that seamlessly streamlines a set of essential population genomic analyses for low-coverage whole genome sequencing (lcWGS) data. loco-pipe is highly automated, easily customizable, massively parallelized, and thus is a valuable tool for both new and experienced users of lcWGS.
AVAILABILITY AND IMPLEMENTATION
loco-pipe is published under the GPLv3. It is freely available on GitHub (github.com/sudmantlab/loco-pipe) and archived on Zenodo (doi.org/10.5281/zenodo.10425920).
摘要
我们开发了loco-pipe，这是一个Snakemake工作流程，可无缝简化针对低覆盖度全基因组测序（lcWGS）数据的一组基本群体基因组分析。loco-pipe高度自动化、易于定制、大规模并行化，因此对于lcWGS的新用户和有经验的用户来说都是一个有价值的工具。
可用性和实现方式
loco-pipe根据GPLv3发布。它可在GitHub（github.com/sudmantlab/loco-pipe）上免费获取，并在Zenodo（doi.org/10.5281/zenodo.10425920）上存档。
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