从人类粪便样本中分离的NORDBIOTIC菌种库中益生菌LPC100菌株的全基因组序列。
Complete genome sequence of the probiotic LPC100 strain from the NORDBIOTIC collection isolated from a human fecal sample.
作者信息
Szczepankowska Agnieszka K, Cukrowska Bożena, Aleksandrzak-Piekarczyk Tamara
机构信息
Institute of Biochemistry and Biophysics, Polish Academy of Sciences , Warsaw, Poland.
Department of Pathomorphology, Immunology Laboratory, Children Memorial Health Institute , Warsaw, Poland.
出版信息
Microbiol Resour Announc. 2024 Aug 13;13(8):e0034424. doi: 10.1128/mra.00344-24. Epub 2024 Jul 16.
Abstract
We report the genome sequence of the human fecal isolate LPC100 from the NORDBIOTIC collection, comprising a 3.075 Mb chromosome and three plasmids (61 kb, 12 kb, and 7 kb). Genetic content reveals the strain's beneficial features-complete lactose metabolic pathway, potential production of bacteriocins, and short-chain fatty acids.
摘要
我们报告了来自北欧生物制剂库的人类粪便分离株LPC100的基因组序列，其包含一条3.075 Mb的染色体和三个质粒（61 kb、12 kb和7 kb）。遗传内容揭示了该菌株的有益特性——完整的乳糖代谢途径、潜在的细菌素产生能力以及短链脂肪酸。
相似文献
1
Complete genome sequence of the probiotic LPC100 strain from the NORDBIOTIC collection isolated from a human fecal sample.
Microbiol Resour Announc. 2024 Aug 13;13(8):e0034424. doi: 10.1128/mra.00344-24. Epub 2024 Jul 16.
2
Whole-genome sequencing and characterization of human fecal isolate LC130 from NORDBIOTIC collection.
Microbiol Resour Announc. 2024 Aug 13;13(8):e0050724. doi: 10.1128/mra.00507-24. Epub 2024 Jul 2.
3
Draft Genome Sequence and Comparative Genome Analysis Reveal Potential Functional Properties in Lacticaseibacillus paracasei ItalPN16.
Curr Microbiol. 2023 Nov 1;80(12):399. doi: 10.1007/s00284-023-03515-6.
4
Complete genome sequence of a potentially probiotic cheese isolate LP140 from the Nordbiotic collection.
Microbiol Resour Announc. 2024 Nov 12;13(11):e0060624. doi: 10.1128/mra.00606-24. Epub 2024 Oct 8.
5
Lacticaseibacillus paracasei LB12, a Potential Probiotic Isolated from Traditional Iranian Fermented Milk (Doogh).
Curr Microbiol. 2023 Sep 2;80(10):333. doi: 10.1007/s00284-023-03376-z.
6
Investigating Safety and Technological Traits of a Leading Probiotic Species: .
Nutrients. 2024 Jul 10;16(14):2212. doi: 10.3390/nu16142212.
7
Probiotic, technological, and health-related characteristics of lactobacilli isolated from breast milk.
J Appl Microbiol. 2023 Jun 1;134(6). doi: 10.1093/jambio/lxad122.
8
Complete genome sequences of Lacticaseibacillus paracasei INIA P272 (CECT 8315) and Lacticaseibacillus rhamnosus INIA P344 (CECT 8316) isolated from breast-fed infants reveal probiotic determinants.
Gene. 2022 Oct 5;840:146743. doi: 10.1016/j.gene.2022.146743. Epub 2022 Jul 20.
9
Genomic Insight Into SP5, Reveals Genes and Gene Clusters of Probiotic Interest and Biotechnological Potential.
Front Microbiol. 2022 Jun 16;13:922689. doi: 10.3389/fmicb.2022.922689. eCollection 2022.
10
Characterization of Probiotic Properties of L2 Isolated from a Traditional Fermented Food "Lben".
Life (Basel). 2022 Dec 21;13(1):21. doi: 10.3390/life13010021.
引用本文的文献
1
Complete genome sequence of subsp. BI040, a probiotic strain with multiple health benefits from the NORDBIOTIC collection.
Microbiol Resour Announc. 2025 Feb 11;14(2):e0111724. doi: 10.1128/mra.01117-24. Epub 2025 Jan 17.
2
The Effect of LPC100 and LP140 on Bone Mineral Density in Postmenopausal Women: A Multicenter, Randomized, Placebo-Controlled Study.
J Clin Med. 2024 Oct 8;13(19):5977. doi: 10.3390/jcm13195977.
本文引用的文献
1
Reducing Immunoreactivity of Gluten Peptides by Probiotic Lactic Acid Bacteria for Dietary Management of Gluten-Related Diseases.
Nutrients. 2024 Mar 27;16(7):976. doi: 10.3390/nu16070976.
2
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
PLoS Comput Biol. 2022 Jan 24;18(1):e1009802. doi: 10.1371/journal.pcbi.1009802. eCollection 2022 Jan.
3
Health-Promoting Properties of A Focus on Kefir Isolates and Exopolysaccharide-Producing Strains.
Foods. 2021 Sep 22;10(10):2239. doi: 10.3390/foods10102239.
4
Trycycler: consensus long-read assemblies for bacterial genomes.
Genome Biol. 2021 Sep 14;22(1):266. doi: 10.1186/s13059-021-02483-z.
5
The Effectiveness and Safety of Multi-Strain Probiotic Preparation in Patients with Diarrhea-Predominant Irritable Bowel Syndrome: A Randomized Controlled Study.
Nutrients. 2021 Feb 26;13(3):756. doi: 10.3390/nu13030756.
6
fastp: an ultra-fast all-in-one FASTQ preprocessor.
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
7
NanoPack: visualizing and processing long-read sequencing data.
Bioinformatics. 2018 Aug 1;34(15):2666-2669. doi: 10.1093/bioinformatics/bty149.
8
Hybrid assembly of the large and highly repetitive genome of , a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm.
Genome Res. 2017 May;27(5):787-792. doi: 10.1101/gr.213405.116. Epub 2017 Jan 27.
9
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
Minireview on regulation of intestinal calcium absorption. Emphasis on molecular mechanisms of transcellular pathway.
Digestion. 2008;77(1):22-34. doi: 10.1159/000116623. Epub 2008 Feb 15.
Zotero 插件