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在偏置下实现从头算分子动力学:用于整合密度泛函理论和非平衡格林函数的CP2K+SMEAGOL接口

Enabling Ab Initio Molecular Dynamics under Bias: The CP2K+SMEAGOL Interface for Integrating Density Functional Theory and Non-Equilibrium Green Functions.

作者信息

Ahart Christian S, Chulkov Sergey K, Cucinotta Clotilde S

机构信息

Imperial College London, Department of Chemistry and Thomas Young Centre, Molecular Sciences Research Hub, London W12 0BZ, U.K.

University of Lincoln, School of Mathematics and Physics, Lincoln LN6 7TS, U.K.

出版信息

J Chem Theory Comput. 2024 Aug 13;20(15):6772-6780. doi: 10.1021/acs.jctc.4c00371. Epub 2024 Jul 16.

DOI:10.1021/acs.jctc.4c00371
PMID:39013589
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11325543/
Abstract

Density functional theory (DFT) combined with non-equilibrium Green's functions (NEGF) is a powerful approach to model quantum transport under external bias potentials at reasonable computational cost. In this work, we present a new interface between the popular mixed Gaussian/plane waves electronic structure package, CP2K, and the NEGF, code SMEAGOL, the most feature-rich implementation of DFT-NEGF available for CP2K to date. The CP2K+SMEAGOL interface includes the implementation of current induced forces. We verify this implementation for a variety of systems: an infinite 1D Au wire, a parallel-plate capacitor, and a Au-H-Au junction. We find good agreement with SMEAGOL calculations performed with SIESTA for the same systems and with the example of a solvated Au wire demonstrating for the first time that DFT-NEGF can be used to perform molecular dynamics simulations under bias of large-scale condensed phase systems under realistic operating conditions.

摘要

密度泛函理论(DFT)与非平衡格林函数(NEGF)相结合,是一种在合理计算成本下对外部偏置势下的量子输运进行建模的强大方法。在这项工作中,我们展示了流行的混合高斯/平面波电子结构软件包CP2K与NEGF代码SMEAGOL之间的新接口,SMEAGOL是迄今为止CP2K可用的功能最丰富的DFT-NEGF实现。CP2K+SMEAGOL接口包括电流诱导力的实现。我们针对各种系统验证了这一实现:无限一维金线、平行板电容器和金-氢-金结。我们发现,对于相同系统,与使用SIESTA进行的SMEAGOL计算结果吻合良好,并且以溶剂化金线为例,首次证明了DFT-NEGF可用于在实际操作条件下对大规模凝聚相系统在偏置下进行分子动力学模拟。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/cb362f0c9739/ct4c00371_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/0268e769e4fa/ct4c00371_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/3ae09c56422a/ct4c00371_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/fa55bcccce17/ct4c00371_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/3a72b7a919f5/ct4c00371_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/4d194ee6dc2d/ct4c00371_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/5e80e15ef705/ct4c00371_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/cb362f0c9739/ct4c00371_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/0268e769e4fa/ct4c00371_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/3ae09c56422a/ct4c00371_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/fa55bcccce17/ct4c00371_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/3a72b7a919f5/ct4c00371_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/4d194ee6dc2d/ct4c00371_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/5e80e15ef705/ct4c00371_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b500/11325543/cb362f0c9739/ct4c00371_0007.jpg

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