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用于从CT图像中进行肺气道分割的细节敏感型3D-UNet

Detail-sensitive 3D-UNet for pulmonary airway segmentation from CT images.

作者信息

Zhang Qin, Li Jiajie, Nan Xiangling, Zhang Xiaodong

机构信息

School of Computer Science and Engineering, South China University of Technology, Guangzhou, Guangdong, 510000, China.

Shenzhen Children's Hospital, Shenzhen, Guangdong, 518000, China.

出版信息

Med Biol Eng Comput. 2024 Dec;62(12):3749-3762. doi: 10.1007/s11517-024-03169-x. Epub 2024 Jul 17.

DOI:10.1007/s11517-024-03169-x
PMID:39017831
Abstract

The segmentation of airway from computed tomography (CT) images plays a vital role in pulmonary disease diagnosis, evaluation, surgical planning, and treatment. Nevertheless, it is still challenging for current methods to handle distal thin and low-contrast airways, leading to mis-segmentation issues. This paper proposes a detail-sensitive 3D-UNet (DS-3D-UNet) that incorporates two new modules into 3D-UNet to segment airways accurately from CT images. The feature recalibration module is designed to give more attention to the foreground airway features through a new attention mechanism. The detail extractor module aims to restore multi-scale detailed features by fusion of features at different levels. Extensive experiments were conducted on the ATM'22 challenge dataset composed of 300 CT scans with airway annotations to evaluate its performance. Quantitative comparisons prove that the proposed model achieves the best performance in terms of Dice similarity coefficient (92.6%) and Intersection over Union (86.3%), outperforming other state-of-the-art methods. Qualitative comparisons further exhibit the superior performance of our method in segmenting thin and confused distal bronchi. The proposed model could provide important references for the diagnosis and treatment of pulmonary diseases, holding promising prospects in the field of digital medicine. Codes are available at https://github.com/nighlevil/DS-3D-UNet/tree/master .

摘要

从计算机断层扫描(CT)图像中分割气道在肺部疾病的诊断、评估、手术规划和治疗中起着至关重要的作用。然而,对于当前方法来说,处理远端细薄且对比度低的气道仍然具有挑战性,这会导致分割错误的问题。本文提出了一种细节敏感的3D-UNet(DS-3D-UNet),它在3D-UNet中融入了两个新模块,以便从CT图像中准确分割气道。特征重新校准模块旨在通过一种新的注意力机制更加关注前景气道特征。细节提取器模块旨在通过融合不同层次的特征来恢复多尺度细节特征。在由300幅带有气道标注的CT扫描组成的ATM'22挑战数据集上进行了广泛实验,以评估其性能。定量比较证明,所提出的模型在骰子相似系数(92.6%)和交并比(86.3%)方面取得了最佳性能,优于其他现有最先进方法。定性比较进一步展示了我们的方法在分割细薄且混乱的远端支气管方面的卓越性能。所提出的模型可为肺部疾病的诊断和治疗提供重要参考,在数字医学领域具有广阔前景。代码可在https://github.com/nighlevil/DS-3D-UNet/tree/master获取。

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本文引用的文献

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Transformer-based 3D U-Net for pulmonary vessel segmentation and artery-vein separation from CT images.基于 Transformer 的 3D U-Net 用于从 CT 图像中进行肺部血管分割和动静脉分离。
Med Biol Eng Comput. 2023 Oct;61(10):2649-2663. doi: 10.1007/s11517-023-02872-5. Epub 2023 Jul 7.
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A systematic review of the techniques for automatic segmentation of the human upper airway using volumetric images.使用容积图像对人体上呼吸道进行自动分割的技术的系统评价。
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使用鲁棒且高效的三维卷积神经网络从计算机断层扫描中自动进行气道分割。
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