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通过机器学习和多组学技术探究神经母细胞瘤中迁移小体的预后意义

Prognostic significance of migrasomes in neuroblastoma through machine learning and multi-omics.

机构信息

Tianjin Cancer Hospital Airport Hospital, National Clinical Research Center for Cancer, Tianjin, China.

Tianjin Medical University Cancer Institute and Hospital, National Clinical Research Center for Cancer, Key Laboratory of Cancer Prevention and Therapy, Tianjin's Clinical Research Center for Cancer, Tianjin, 300060, China.

出版信息

Sci Rep. 2024 Jul 18;14(1):16629. doi: 10.1038/s41598-024-67682-7.

Abstract

This study explores migrasomes' role in neuroblastoma, a common malignant tumor in children, and their potential impact on tumor formation. We analyzed neuroblastoma RNA-seq datasets from public databases, including GSE62564, GSE181559, target, and fwr144. Through data normalization and unsupervised classification using migrasome-specific molecular markers, Differentially Expressed Genes were identified, followed by functional enrichment analysis. Our novel migrasome-associated machine learning model, MigScore, was developed using ten algorithms and 101 combinations, validated on two single-cell datasets. This enabled immune infiltration assessment and drug compatibility prediction, highlighting the utility of MS275, a histone deacetylase inhibitor. Results showed a significant inverse relationship between MigScore and favorable clinical outcomes, elucidating the link between migrasome pathways and tumor immunogenicity. These findings suggest that migrasomes are crucial in neuroblastoma prognosis, leading to the possibility of personalized treatment strategies and improved outcomes.

摘要

本研究探讨了迁移体在神经母细胞瘤(儿童常见的恶性肿瘤)中的作用及其对肿瘤形成的潜在影响。我们分析了来自公共数据库的神经母细胞瘤 RNA-seq 数据集,包括 GSE62564、GSE181559、target 和 fwr144。通过使用迁移体特异性分子标记物进行数据归一化和无监督分类,鉴定了差异表达基因,然后进行功能富集分析。我们使用十种算法和 101 种组合开发了新的迁移体相关机器学习模型 MigScore,并在两个单细胞数据集上进行了验证。这实现了免疫浸润评估和药物相容性预测,突出了组蛋白去乙酰化酶抑制剂 MS275 的效用。结果表明 MigScore 与良好的临床结局呈显著负相关,阐明了迁移体途径与肿瘤免疫原性之间的联系。这些发现表明迁移体在神经母细胞瘤的预后中至关重要,从而有可能制定个性化的治疗策略并改善结局。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f583/11258241/03e62499dd4f/41598_2024_67682_Fig1_HTML.jpg

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