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揭示细菌染色体结构的奥秘:探索基于 3C 的方法的意义。

Shedding Light on Bacterial Chromosome Structure: Exploring the Significance of 3C-Based Approaches.

机构信息

Université Paris-Saclay, UVSQ, Inserm, Infection et inflammation, Montigny-Le-Bretonneux, France.

出版信息

Methods Mol Biol. 2024;2819:3-26. doi: 10.1007/978-1-0716-3930-6_1.

DOI:10.1007/978-1-0716-3930-6_1
PMID:39028499
Abstract

The complex architecture of DNA within living organisms is essential for maintaining the genetic information that dictates their functions and characteristics. Among the many complexities of genetic material organization, the folding and arrangement of DNA into chromosomes play a critical role in regulating gene expression, replication, and other essential cellular processes. Bacteria, despite their apparently simple cellular structure, exhibit a remarkable level of chromosomal organization that influences their adaptability and survival in diverse environments. Understanding the three-dimensional arrangement of bacterial chromosomes has long been a challenge due to technical limitations, but the development of Chromosome Conformation Capture (3C) methods revolutionized our ability to explore the hierarchical structure and the dynamics of bacterial genomes. Here, we review the major advances in the field of bacterial chromosome structure using 3C technology over the past decade.

摘要

生物体内 DNA 的复杂结构对于维持决定其功能和特征的遗传信息至关重要。在遗传物质组织的众多复杂性中,DNA 折叠和排列成染色体在调节基因表达、复制和其他重要细胞过程中起着关键作用。尽管细菌的细胞结构看起来很简单,但它们表现出的染色体组织水平却非常显著,这影响了它们在不同环境中的适应性和生存能力。由于技术限制,长期以来,了解细菌染色体的三维排列一直是一个挑战,但染色体构象捕获(3C)方法的发展彻底改变了我们探索细菌基因组的层次结构和动态的能力。在这里,我们回顾了过去十年中使用 3C 技术在细菌染色体结构领域的主要进展。

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本文引用的文献

1
Insights in bacterial genome folding.细菌基因组折叠的研究进展
Curr Opin Struct Biol. 2023 Oct;82:102679. doi: 10.1016/j.sbi.2023.102679. Epub 2023 Aug 19.
2
Chromosome folding and prophage activation reveal specific genomic architecture for intestinal bacteria.染色体折叠和原噬菌体激活揭示了肠道细菌特定的基因组结构。
Microbiome. 2023 May 19;11(1):111. doi: 10.1186/s40168-023-01541-x.
3
Transcription shapes 3D chromatin organization by interacting with loop extrusion.转录通过与环挤出相互作用来塑造 3D 染色质结构。
Proc Natl Acad Sci U S A. 2023 Mar 14;120(11):e2210480120. doi: 10.1073/pnas.2210480120. Epub 2023 Mar 10.
4
Cohesin-dependent chromosome loop extrusion is limited by transcription and stalled replication forks.黏连蛋白依赖性染色体环挤压受转录和停滞的复制叉限制。
Sci Adv. 2022 Jun 10;8(23):eabn7063. doi: 10.1126/sciadv.abn7063.
5
Psoralen mapping reveals a bacterial genome supercoiling landscape dominated by transcription.补骨脂素作图揭示了转录主导的细菌基因组超螺旋景观。
Nucleic Acids Res. 2022 May 6;50(8):4436-4449. doi: 10.1093/nar/gkac244.
6
A chromosomal loop anchor mediates bacterial genome organization.染色体环锚介导细菌基因组组织。
Nat Genet. 2022 Feb;54(2):194-201. doi: 10.1038/s41588-021-00988-8. Epub 2022 Jan 24.
7
Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation.代谢分化过程中分隔的链霉菌染色体的动力学。
Nat Commun. 2021 Sep 1;12(1):5221. doi: 10.1038/s41467-021-25462-1.
8
Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development.链霉菌属线性染色体在孢子发生发育过程中的空间重排。
Nat Commun. 2021 Sep 1;12(1):5222. doi: 10.1038/s41467-021-25461-2.
9
Genome folding through loop extrusion by SMC complexes.通过 SMC 复合物的环伸出进行基因组折叠。
Nat Rev Mol Cell Biol. 2021 Jul;22(7):445-464. doi: 10.1038/s41580-021-00349-7. Epub 2021 Mar 25.
10
A Hi-C data-integrated model elucidates E. coli chromosome's multiscale organization at various replication stages.高分辨率染色体构象捕获数据整合模型阐释了大肠杆菌染色体在不同复制阶段的多种尺度的结构。
Nucleic Acids Res. 2021 Apr 6;49(6):3077-3091. doi: 10.1093/nar/gkab094.