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大肠杆菌核糖体RNA含有与插入序列IS1和IS2同源的序列。

E. coli ribosomal RNA contains sequences homologous to insertion sequences IS1 and IS2.

作者信息

Nisen P, Shapiro L

出版信息

Nature. 1979;282(5741):872-4. doi: 10.1038/282872a0.

DOI:10.1038/282872a0
PMID:390405
Abstract

The insertion sequence (IS) elements, IS1 and IS2, present in multiple copies in the Escherichia coli chromosome, are transposable genetic elements of known nucleotide sequence. These elements can modulate gene expression, but it is not known whether they normally function in genetic control. To determine whether IS elements could exert control through specific RNA transcripts, we hybridised lambda NNC1857 r14 (carrying IS1) and pBR322 (carrying a portion of IS2) to Northern blots of E. coli RNA. Regions of homology between the IS elements and ribosomal RNA were observed. Computer analysis of reported nucleotide sequences detected large segments of homology between the IS elements and both 23S and 16S rRNA. Additional homologous sequences in phi X174 and a leader region of a ribosomal protein gene cluster were also detected. The homologous sequence between IS2 and 16S rTNA is the same sequence in phi X174 DNA which codes for the ends of the E and D gene and the start of J. The partial IS sequences may represent silent evolutionary remnants or they could modulate the expression of genes carrying these sequences.

摘要

插入序列(IS)元件IS1和IS2在大肠杆菌染色体中以多拷贝形式存在,是已知核苷酸序列的可转座遗传元件。这些元件可调节基因表达,但它们是否正常发挥遗传控制功能尚不清楚。为了确定IS元件是否能通过特定的RNA转录本发挥控制作用,我们将λNNC1857 r14(携带IS1)和pBR322(携带IS2的一部分)与大肠杆菌RNA的Northern印迹杂交。观察到IS元件与核糖体RNA之间的同源区域。对已报道核苷酸序列的计算机分析检测到IS元件与23S和16S rRNA之间有大片段同源性。还在φX174和核糖体蛋白基因簇的一个前导区域中检测到了额外的同源序列。IS2与16S rRNA之间的同源序列与φX174 DNA中编码E和D基因末端以及J基因起始的序列相同。部分IS序列可能代表沉默的进化残余物,或者它们可能调节携带这些序列的基因的表达。

相似文献

1
E. coli ribosomal RNA contains sequences homologous to insertion sequences IS1 and IS2.大肠杆菌核糖体RNA含有与插入序列IS1和IS2同源的序列。
Nature. 1979;282(5741):872-4. doi: 10.1038/282872a0.
2
Deoxyribonucleic acid sequence homologies among bacterial insertion sequence elements and genomes of various organisms.细菌插入序列元件与各种生物体基因组之间的脱氧核糖核酸序列同源性。
J Bacteriol. 1979 Nov;140(2):588-96. doi: 10.1128/jb.140.2.588-596.1979.
3
Comparison of IS1, IS2 and IS3 copy number in Escherichia coli strains K-12, B and C.大肠杆菌K-12、B和C菌株中IS1、IS2和IS3拷贝数的比较
Gene. 1981 Dec;16(1-3):161-70. doi: 10.1016/0378-1119(81)90072-x.
4
Mapping of insertion elements IS1, IS2 and IS3 on the Escherichia coli K-12 chromosome. Role of the insertion elements in formation of Hfrs and F' factors and in rearrangement of bacterial chromosomes.大肠杆菌K-12染色体上插入序列IS1、IS2和IS3的定位。插入序列在高频重组菌(Hfr)和F'因子形成以及细菌染色体重排中的作用。
J Mol Biol. 1989 Aug 20;208(4):601-14. doi: 10.1016/0022-2836(89)90151-4.
5
Transcription of insertion elements IS1 and IS2 in vitro.插入元件IS1和IS2的体外转录
Mol Gen Genet. 1977 May 20;153(1):51-60. doi: 10.1007/BF01035996.
6
Electron microscope heteroduplex studies of sequence relations among bacterial plasmids: identification and mapping of the insertion sequences IS1 and IS2 in F and R plasmids.细菌质粒间序列关系的电子显微镜异源双链研究:F质粒和R质粒中插入序列IS1和IS2的鉴定与定位
J Bacteriol. 1975 May;122(2):764-75. doi: 10.1128/jb.122.2.764-775.1975.
7
Genetic organization of insertion element IS2 based on a revised nucleotide sequence.基于修正核苷酸序列的插入元件IS2的基因组织。
Gene. 1987;59(2-3):291-6. doi: 10.1016/0378-1119(87)90337-4.
8
Analysis of transposable elements inserted in the genomes of bacteriophages Mu and P1.对插入噬菌体Mu和P1基因组中的转座元件的分析。
Gene. 1978 Jul;3(4):315-31. doi: 10.1016/0378-1119(78)90041-0.
9
IS150: distribution, nucleotide sequence and phylogenetic relationships of a new E. coli insertion element.IS150:一种新型大肠杆菌插入元件的分布、核苷酸序列及系统发育关系
Nucleic Acids Res. 1988 Jul 25;16(14B):6789-802. doi: 10.1093/nar/16.14.6789.
10
Insertions of transposable elements in the promoter proximal region of the gene cluster for Escherichia coli H+-ATPase: 8 base pair repeat generated by insertion of IS1.转座元件插入大肠杆菌H⁺-ATP酶基因簇启动子近端区域:由IS1插入产生的8碱基对重复序列
Mol Gen Genet. 1984;194(1-2):179-87. doi: 10.1007/BF00383514.

引用本文的文献

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The Dynamic Interplay Between Ribosomal DNA and Transposable Elements: A Perspective From Genomics and Cytogenetics.核糖体 DNA 与转座元件之间的动态相互作用:从基因组学和细胞遗传学角度看。
Mol Biol Evol. 2024 Mar 1;41(3). doi: 10.1093/molbev/msae025.
2
Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea.插入序列在蓝细菌和古细菌中显示出多样的近期活性。
BMC Genomics. 2008 Jan 24;9:36. doi: 10.1186/1471-2164-9-36.
3
The sequence of IS4.IS4的序列。
Mol Gen Genet. 1981;181(2):169-75. doi: 10.1007/BF00268423.