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无细胞基因表达在生物打印流控网络中的应用。

Cell-Free Gene Expression in Bioprinted Fluidic Networks.

机构信息

TU Munich, School of Natural Sciences, Department of Bioscience, 85748 Garching b. München, Germany.

出版信息

ACS Synth Biol. 2024 Aug 16;13(8):2447-2456. doi: 10.1021/acssynbio.4c00187. Epub 2024 Jul 23.

DOI:10.1021/acssynbio.4c00187
PMID:39042670
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11334185/
Abstract

The realization of soft robotic devices with life-like properties requires the engineering of smart, active materials that can respond to environmental cues in similar ways as living cells or organisms. Cell-free expression systems provide an approach for embedding dynamic molecular control into such materials that avoids many of the complexities associated with genuinely living systems. Here, we present a strategy to integrate cell-free protein synthesis within agarose-based hydrogels that can be spatially organized and supplied by a synthetic vasculature. We first utilize an indirect printing approach with a commercial bioprinter and Pluronic F-127 as a fugitive ink to define fluidic channel structures within the hydrogels. We then investigate the impact of the gel matrix on the expression of proteins in cell-extract, which is found to depend on the gel density and the dilution of the expression system. When supplying the vascularized hydrogels with reactants, larger components such as DNA plasmids are confined to the channels or immobilized in the gels while nanoscale reaction components can diffusively spread within the gel. Using a single supply channel, we demonstrate different spatial protein concentration profiles emerging from different cell-free gene circuits comprising production, gene activation, and negative feedback. Variation of the channel design allows the creation of specific concentration profiles such as a long-term stable gradient or the homogeneous supply of a hydrogel with proteins.

摘要

实现具有类生命特性的软机器人设备需要设计智能、活性材料,使其能够以类似于活细胞或生物体的方式对环境线索做出反应。无细胞表达系统为将动态分子控制嵌入此类材料提供了一种方法,避免了与真正的生命系统相关的许多复杂性。在这里,我们提出了一种在琼脂糖基水凝胶内整合无细胞蛋白合成的策略,该水凝胶可以通过合成脉管系统进行空间组织和供应。我们首先使用商业生物打印机和 Pluronic F-127 作为可挥发墨水,采用间接打印方法在水凝胶内定义流体通道结构。然后,我们研究了凝胶基质对细胞提取物中蛋白质表达的影响,发现其取决于凝胶密度和表达系统的稀释度。当向血管化水凝胶供应反应物时,较大的成分(如 DNA 质粒)被限制在通道内或固定在凝胶中,而纳米级反应成分可以在凝胶内扩散。使用单个供应通道,我们展示了由生产、基因激活和负反馈组成的不同无细胞基因回路产生的不同空间蛋白质浓度分布。通道设计的变化允许创建特定的浓度分布,例如长期稳定的梯度或蛋白质在水凝胶中的均匀供应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/f3594b52f332/sb4c00187_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/8fae9fcbda07/sb4c00187_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/fde1a298fb74/sb4c00187_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/6c083a6f0681/sb4c00187_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/f3594b52f332/sb4c00187_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/8fae9fcbda07/sb4c00187_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/fde1a298fb74/sb4c00187_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/6c083a6f0681/sb4c00187_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2687/11334185/f3594b52f332/sb4c00187_0004.jpg

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本文引用的文献

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Cell-Free Protein Expression in Polymer Materials.聚合物材料中的无细胞蛋白质表达。
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