Centre for Novel Agricultural Products, Department of Biology, University of York, York YO10 5DD, UK.
Bioscience Technology Facility, Department of Biology, University of York, York YO10 5DD, UK.
G3 (Bethesda). 2024 Oct 7;14(10). doi: 10.1093/g3journal/jkae172.
The Nepetoideae, a subfamily of Lamiaceae (mint family), is rich in aromatic plants, many of which are sought after for their use as flavors and fragrances or for their medicinal properties. Here, we present genome assemblies for two species in Nepetiodeae: Drepanocaruym sewerzowii and Marmoritis complanata. Both assemblies were generated using Oxford Nanopore Q20 + reads with contigs anchored to nine pseudomolecules that resulted in 335 Mb and 305 Mb assemblies, respectively, and BUSCO scores above 95% for both the assembly and annotation. We furthermore provide a species tree for the Lamiaceae using only genome-derived gene models, complementing existing transcriptome and marker-based phylogenies.
内番亚科（唇形科）是一个富含芳香植物的亚科，其中许多植物因其作为香料和香精的用途或药用特性而备受追捧。在这里，我们展示了内番亚科的两个物种的基因组组装：Drepanocaruym sewerzowii 和 Marmoritis complanata。两个组装都是使用 Oxford Nanopore Q20+reads 生成的，将连续体锚定到九个假分子上，分别得到 335 Mb 和 305 Mb 的组装体，组装和注释的 BUSCO 评分均高于 95%。此外，我们还使用仅基于基因组的基因模型提供了唇形科的物种树，补充了现有的转录组和基于标记的系统发育。
