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解锁南极分子时间胶囊 - 从博物馆保存的海绵中回收历史环境 DNA。

Unlocking Antarctic molecular time-capsules - Recovering historical environmental DNA from museum-preserved sponges.

机构信息

Department of Marine Science, University of Otago, Dunedin, New Zealand.

Department of Anatomy, University of Otago, Dunedin, New Zealand.

出版信息

Mol Ecol Resour. 2024 Oct;24(7):e14001. doi: 10.1111/1755-0998.14001. Epub 2024 Jul 25.

Abstract

Marine sponges have recently emerged as efficient natural environmental DNA (eDNA) samplers. The ability of sponges to accumulate eDNA provides an exciting opportunity to reconstruct contemporary communities and ecosystems with high temporal and spatial precision. However, the use of historical eDNA, trapped within the vast number of specimens stored in scientific collections, opens up the opportunity to begin to reconstruct the communities and ecosystems of the past. Here, we define the term 'heDNA' to denote the historical environmental DNA that can be obtained from the recent past with high spatial and temporal accuracy. Using a variety of Antarctic sponge specimens stored in an extensive marine invertebrate collection, we were able to recover information on Antarctic fish biodiversity from specimens up to 20 years old. We successfully recovered 64 fish heDNA signals from 27 sponge specimens. Alpha diversity measures did not differ among preservation methods, but sponges stored frozen had a significantly different fish community composition compared to those stored dry or in ethanol. Our results show that we were consistently and reliably able to extract the heDNA trapped within marine sponge specimens, thereby enabling the reconstruction and investigation of communities and ecosystems of the recent past with a spatial and temporal resolution previously unattainable. Future research into heDNA extraction from other preservation methods, as well as the impact of specimen age and collection method, will strengthen and expand the opportunities for this novel resource to access new knowledge on ecological change during the last century.

摘要

海洋海绵最近已成为高效的天然环境 DNA(eDNA)采样器。海绵积累 eDNA 的能力为以高精度的时空分辨率重建当代群落和生态系统提供了一个令人兴奋的机会。然而,利用保存在科学收藏中的大量标本中捕获的历史 eDNA,为重建过去的群落和生态系统开辟了机会。在这里,我们定义“heDNA”一词表示可以从最近的过去以高精度的时空分辨率获得的历史环境 DNA。使用从广泛的海洋无脊椎动物收藏中存储的各种南极海绵标本,我们能够从长达 20 年的标本中恢复有关南极鱼类生物多样性的信息。我们成功地从 27 个海绵标本中回收了 64 个鱼类 heDNA 信号。保存方法之间的 alpha 多样性测量值没有差异,但与干燥或乙醇保存的海绵相比,冷冻保存的海绵的鱼类群落组成有明显差异。我们的结果表明,我们能够始终如一地从海洋海绵标本中提取被困的 heDNA,从而能够以以前无法达到的时空分辨率重建和研究过去的群落和生态系统。未来对其他保存方法的 heDNA 提取以及标本年龄和采集方法的影响的研究,将加强和扩大利用这一新型资源获取上个世纪生态变化新知识的机会。

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