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弯曲DNA

Curved DNA.

作者信息

Trifonov E N

出版信息

CRC Crit Rev Biochem. 1985;19(2):89-106. doi: 10.3109/10409238509082540.

DOI:10.3109/10409238509082540
PMID:3905255
Abstract

A priori considerations and the concept of the sequence-dependent local curving of the DNA axis. Experimental evidence: electric dichroism (relaxation time measurements); anomalous electrophoretic mobility and gel-filtration of some restriction fragments of DNA; one-sided binding of the nucleosomal DNA to the mica surface. Theoretical predictions concerning the nucleotide sequences of the curved DNA. Discovery of the dinucleotide periodicity in the chromatin DNA. The sequence periodicity as a tool for mapping of the nucleosomes along the sequences. Preferential binding of the histone octamers to the curved pieces of DNA--sequence analysis predictions and comparison with experiments: Theoretical and experimental estimates of the tilt and roll angles for different combinations of the neighboring base-pairs. Inherent sequence-dependent curvature and apparent persistence length of DNA.

摘要

先验考虑因素以及DNA轴序列依赖性局部弯曲的概念。实验证据:电二色性(弛豫时间测量);DNA某些限制性片段的异常电泳迁移率和凝胶过滤;核小体DNA与云母表面的单侧结合。关于弯曲DNA核苷酸序列的理论预测。染色质DNA中二核苷酸周期性的发现。序列周期性作为沿序列定位核小体的工具。组蛋白八聚体与DNA弯曲片段的优先结合——序列分析预测及与实验的比较:不同相邻碱基对组合的倾斜角和滚动角的理论与实验估计。DNA固有的序列依赖性曲率和表观持久长度。

相似文献

1
Curved DNA.弯曲DNA
CRC Crit Rev Biochem. 1985;19(2):89-106. doi: 10.3109/10409238509082540.
2
Nucleotide sequence-directed mapping of the nucleosomes.核小体的核苷酸序列导向图谱分析
Nucleic Acids Res. 1983 Jun 11;11(11):3833-51. doi: 10.1093/nar/11.11.3833.
3
Attraction, phasing and neighbour effects of histone octamers on curved DNA.组蛋白八聚体对弯曲DNA的吸引力、相位和邻近效应。
J Mol Biol. 1990 Nov 20;216(2):363-74. doi: 10.1016/S0022-2836(05)80327-4.
4
Nucleotide sequence-directed mapping of the nucleosomes of SV40 chromatin.SV40染色质核小体的核苷酸序列导向图谱分析。
Cell Biophys. 1984 Mar;6(1):1-8. doi: 10.1007/BF02788576.
5
Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles.不含A-A的弯曲DNA:所有16个DNA楔形角的实验估计
Proc Natl Acad Sci U S A. 1991 Mar 15;88(6):2312-6. doi: 10.1073/pnas.88.6.2312.
6
Unique translational positioning of nucleosomes on synthetic DNAs.核小体在合成DNA上独特的翻译定位。
Nucleic Acids Res. 1998 Jun 1;26(11):2526-35. doi: 10.1093/nar/26.11.2526.
7
Two-dimensional hybridization mapping of nucleosomes. comparison of DNA and protein patterns.核小体的二维杂交图谱。DNA与蛋白质模式的比较。
J Mol Biol. 1981 Mar 5;146(3):287-304. doi: 10.1016/0022-2836(81)90389-2.
8
Sequence-dependent deformational anisotropy of chromatin DNA.染色质DNA的序列依赖性变形各向异性
Nucleic Acids Res. 1980 Sep 11;8(17):4041-53. doi: 10.1093/nar/8.17.4041.
9
DNA topology of the ordered chromatin domain 5' to the human c-myc gene.人类c-myc基因5'端有序染色质结构域的DNA拓扑结构。
Nucleic Acids Res. 1989 Apr 11;17(7):2819-33. doi: 10.1093/nar/17.7.2819.
10
Non-random arrangement of nucleosomes in satellite I containing chromatin of rat liver.大鼠肝脏含卫星I染色质中核小体的非随机排列。
Nucleic Acids Res. 1980 Nov 25;8(22):5377-90. doi: 10.1093/nar/8.22.5377.

引用本文的文献

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Genomic instability in the PARK2 locus is associated with Parkinson's disease.PARK2基因座的基因组不稳定性与帕金森病相关。
J Appl Genet. 2015 Nov;56(4):451-461. doi: 10.1007/s13353-015-0282-9. Epub 2015 Apr 2.
3
NAP1-assisted nucleosome assembly on DNA measured in real time by single-molecule magnetic tweezers.
利用单分子磁镊实时测量 NAP1 辅助的 DNA 核小体组装。
PLoS One. 2012;7(9):e46306. doi: 10.1371/journal.pone.0046306. Epub 2012 Sep 25.
4
Persistence length of human cardiac α-tropomyosin measured by single molecule direct probe microscopy.采用单分子直接探针显微镜测量人心肌α-原肌球蛋白的持久长度。
PLoS One. 2012;7(6):e39676. doi: 10.1371/journal.pone.0039676. Epub 2012 Jun 21.
5
Differences in DNA curvature-related sequence periodicity between prokaryotic chromosomes and phages, and relationship to chromosomal prophage content.原核生物染色体与噬菌体之间 DNA 曲率相关序列周期性的差异,以及与染色体前噬菌体含量的关系。
BMC Genomics. 2012 May 15;13:188. doi: 10.1186/1471-2164-13-188.
6
Variety of genomic DNA patterns for nucleosome positioning.核小体定位的基因组 DNA 模式多样性。
Genome Res. 2011 Nov;21(11):1863-71. doi: 10.1101/gr.116228.110. Epub 2011 Jul 12.
7
Comparative analysis of sequence periodicity among prokaryotic genomes points to differences in nucleoid structure and a relationship to gene expression.原核生物基因组序列周期性的比较分析表明核区结构的差异与基因表达有关。
J Bacteriol. 2010 Jul;192(14):3763-72. doi: 10.1128/JB.00149-10. Epub 2010 May 21.
8
Sequence periodicity in nucleosomal DNA and intrinsic curvature.核小体DNA中的序列周期性与固有曲率。
BMC Struct Biol. 2010 May 17;10 Suppl 1(Suppl 1):S8. doi: 10.1186/1472-6807-10-S1-S8.
9
Restriction landmark genomic scanning (RLGS) spot identification by second generation virtual RLGS in multiple genomes with multiple enzyme combinations.通过第二代虚拟限制 landmark 基因组扫描(RLGS)在多个基因组中使用多种酶组合进行 RLGS 斑点鉴定。
BMC Genomics. 2007 Nov 30;8:446. doi: 10.1186/1471-2164-8-446.
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A-tract clusters may facilitate DNA packaging in bacterial nucleoid.A 序列簇可能有助于细菌类核中的 DNA 包装。
Nucleic Acids Res. 2005 Jul 15;33(12):3907-18. doi: 10.1093/nar/gki699. Print 2005.