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探索暴露组的化学空间:我们已经走了多远?

Exploring the Chemical Space of the Exposome: How Far Have We Gone?

作者信息

Samanipour Saer, Barron Leon Patrick, van Herwerden Denice, Praetorius Antonia, Thomas Kevin V, O'Brien Jake William

机构信息

Van't Hoff Institute for Molecular Sciences (HIMS), University of Amsterdam, Amsterdam 1090 GD, The Netherlands.

UvA Data Science Center, University of Amsterdam, Amsterdam 1090 GD, The Netherlands.

出版信息

JACS Au. 2024 Jun 20;4(7):2412-2425. doi: 10.1021/jacsau.4c00220. eCollection 2024 Jul 22.

Abstract

Around two-thirds of chronic human disease can not be explained by genetics alone. The Lancet Commission on Pollution and Health estimates that 16% of global premature deaths are linked to pollution. Additionally, it is now thought that humankind has surpassed the safe planetary operating space for introducing human-made chemicals into the Earth System. Direct and indirect exposure to a myriad of chemicals, known and unknown, poses a significant threat to biodiversity and human health, from vaccine efficacy to the rise of antimicrobial resistance as well as autoimmune diseases and mental health disorders. The exposome chemical space remains largely uncharted due to the sheer number of possible chemical structures, estimated at over 10 unique forms. Conventional methods have cataloged only a fraction of the exposome, overlooking transformation products and often yielding uncertain results. In this Perspective, we have reviewed the latest efforts in mapping the exposome chemical space and its subspaces. We also provide our view on how the integration of data-driven approaches might be able to bridge the identified gaps.

摘要

约三分之二的人类慢性疾病无法仅用遗传学来解释。《柳叶刀》污染与健康委员会估计,全球16%的过早死亡与污染有关。此外,现在人们认为,人类向地球系统引入人造化学品的行为已经超出了安全的地球运行空间。直接或间接接触无数已知和未知的化学物质,对生物多样性和人类健康构成了重大威胁,从疫苗效力到抗菌药物耐药性的增加,以及自身免疫性疾病和精神健康障碍。由于可能的化学结构数量庞大,估计超过10种独特形式,暴露组化学空间在很大程度上仍未被探索。传统方法只对暴露组的一小部分进行了编目,忽略了转化产物,且常常得出不确定的结果。在这篇观点文章中,我们回顾了绘制暴露组化学空间及其子空间的最新努力。我们还就数据驱动方法的整合如何能够弥合已发现的差距发表了看法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3dbd/11267556/de73b716d123/au4c00220_0001.jpg

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