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三种扁蝽(半翅目:扁蝽科)线粒体基因组的比较分析及扁蝽科的系统发育意义

Comparative Analysis of the Mitochondrial Genomes of Three Species of (Hemiptera: Aradidae) and the Phylogenetic Implications of Aradidae.

作者信息

Ji Liangpeng, Jia Zhancheng, Bai Xiaoshuan

机构信息

College of Life Sciences and Technology, Inner Mongolia Normal University, Hohhot 010022, China.

出版信息

Insects. 2024 Jul 14;15(7):533. doi: 10.3390/insects15070533.

DOI:10.3390/insects15070533
PMID:39057266
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11276747/
Abstract

The mitochondrial genomes of three species of were sequenced, annotated, and analyzed. The genome length of the three species of the genus is 15,070-15,202 bp, with a typical gene number, including a control region, 2 ribosomal RNA genes (rRNAs), 22 transfer RNA genes (tRNAs), and 13 protein-coding genes (PCGs). It was found that the mitochondrial genome of had AT bias. Except for the lack of a DHU arm of the S1 gene, the other tRNAs had a typical cloverleaf structure, and the codon usage preferences of the three species exhibited high similarity. In addition, tRNA gene rearrangements were observed among the three subfamilies of Aradidae (Mezirinae, Calisiinae, Aradinae), and it was found that codon usage preferences appeared to be less affected by base mutation and more by natural selection. The Pi and Ka/Ks values indicated that 1 was the most conserved gene in the mitochondrial genome of Aradidae, while 8 and 6 were rapidly evolved genes. Substitution saturation level analysis showed that the nucleic acid sequence of mitochondrial protein-coding genes in Aradidae did not reach saturation, suggesting the rationality of the phylogenetic analysis data. Bayesian and maximum likelihood methods were used to analyze the phylogeny of 16 species of Hemiptera insects, which supported the monophyly of Aneurinae, Carventinae, and Mezirinae, as well as the monophyly of . Based on fossils and previous studies, the differentiation time was inferred, indicating that diverged about 57 million years ago.

摘要

对三种[物种名称未给出]的线粒体基因组进行了测序、注释和分析。该属三种物种的基因组长度为15,070 - 15,202碱基对,具有典型的基因数量,包括一个控制区、2个核糖体RNA基因(rRNAs)、22个转运RNA基因(tRNAs)和13个蛋白质编码基因(PCGs)。发现[物种名称未给出]的线粒体基因组具有AT偏好性。除了S1基因缺乏DHU臂外,其他tRNAs具有典型的三叶草结构,并且这三个物种的密码子使用偏好表现出高度相似性。此外,在蛛缘蝽科(Mezirinae亚科、Calisiinae亚科、Aradinae亚科)的三个亚科之间观察到了tRNA基因重排,并且发现密码子使用偏好似乎受碱基突变的影响较小,而受自然选择的影响较大。Pi和Ka/Ks值表明,1是蛛缘蝽科线粒体基因组中最保守的基因,而8和6是快速进化的基因。替代饱和度水平分析表明,蛛缘蝽科线粒体蛋白质编码基因的核酸序列未达到饱和,这表明系统发育分析数据的合理性。使用贝叶斯和最大似然方法分析了16种半翅目昆虫的系统发育,支持了Aneurinae、Carventinae和Mezirinae亚科的单系性以及[物种名称未给出]的单系性。基于化石和先前的研究,推断了分化时间,表明[物种名称未给出]大约在5700万年前分化。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/f5a2a6e51366/insects-15-00533-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/79fdea1e1b70/insects-15-00533-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/06410067bd8c/insects-15-00533-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/120c480d7b70/insects-15-00533-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/63eeb93722ee/insects-15-00533-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/60f05cb224f0/insects-15-00533-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/23527775e96c/insects-15-00533-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/bd73bb29483e/insects-15-00533-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/fd2a99ee2f4c/insects-15-00533-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/dac297a17ca0/insects-15-00533-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/f5a2a6e51366/insects-15-00533-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/79fdea1e1b70/insects-15-00533-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/06410067bd8c/insects-15-00533-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/120c480d7b70/insects-15-00533-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/63eeb93722ee/insects-15-00533-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/60f05cb224f0/insects-15-00533-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/23527775e96c/insects-15-00533-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/bd73bb29483e/insects-15-00533-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/fd2a99ee2f4c/insects-15-00533-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/dac297a17ca0/insects-15-00533-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f02d/11276747/f5a2a6e51366/insects-15-00533-g010.jpg

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