Education Ministry Key Laboratory of Integrated Management of Crop Diseases and Pests/State & Local Joint Engineering Research Center of Green Pesticide Invention and Application, Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing 210000, China.
Int J Mol Sci. 2024 Jul 9;25(14):7505. doi: 10.3390/ijms25147505.
is distributed in several Asian countries. The larvae and adults often cause substantial economic losses to Solanaceae crops such as potato, tomato, eggplant, and Chinese boxthorn. Even though a chromosome-level genome has been documented, the expression profiles of genes involved in development are not determined. In this study, we constructed embryonic, larval, pupal, and adult transcriptomes, generated a comprehensive RNA-sequencing dataset including ~52 Gb of clean data, and identified 602,773,686 cleaned reads and 33,269 unigenes. A total of 18,192 unigenes were successfully annotated against NCBI nonredundant protein sequences, Swissprot, Eukaryotic Orthologous Groups, Gene Ontology (GO), or Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. There were 3580, 2040, 5160, 2496, 3008, and 3895 differentially expressed genes (DEGs) between adult/egg, egg/larval, larval/pupal, adult/pupal, egg/pupal, and adult/larval samples, respectively. GO and KEGG analyses of the DEGs highlighted several critical pathways associated with specific developing stages. This is the first comprehensive transcriptomic dataset encompassing all developmental stages in . Our data may facilitate the exploitation of gene targets for pest control and can serve as a valuable gene resource for future molecular investigations.
在中国南方和东南亚国家广泛分布。其幼虫和成虫常导致马铃薯、番茄、茄子和中国沙棘等茄科作物遭受重大经济损失。尽管已经有染色体水平的基因组被记录,但涉及发育的基因表达谱尚未确定。在这项研究中,我们构建了胚胎期、幼虫期、蛹期和成虫期转录组,生成了一个包含约 52Gb 清洁数据的综合 RNA-seq 数据集,并鉴定了 602773686 条清洁reads 和 33269 条 unigenes。总共成功注释了 18192 条 unigenes,这些 unigenes可以与 NCBI 非冗余蛋白序列、Swissprot、真核同源物、基因本体论(GO)或京都基因与基因组百科全书(KEGG)数据库相对应。在成虫/卵、卵/幼虫、幼虫/蛹、成虫/蛹、卵/蛹和成虫/幼虫样本之间,分别有 3580、2040、5160、2496、3008 和 3895 个差异表达基因(DEGs)。对 DEGs 的 GO 和 KEGG 分析突出了与特定发育阶段相关的几个关键途径。这是首次涵盖 所有发育阶段的综合转录组数据集。我们的数据可能有助于开发害虫防治的基因靶标,并可作为未来分子研究的宝贵基因资源。