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CRISPR/dCas9 介导的中国舌鳎()睾丸细胞中 DNA 甲基化编辑。

CRISPR/dCas9-Mediated DNA Methylation Editing on in Chinese Tongue Sole () Testis Cells.

机构信息

College of Fisheries and Life Science, Shanghai Ocean University, Shanghai 201306, China.

State Key Laboratory of Mariculture Biobreeding and Sustainable Goods, Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao 266071, China.

出版信息

Int J Mol Sci. 2024 Jul 11;25(14):7637. doi: 10.3390/ijms25147637.

Abstract

DNA methylation is a key epigenetic mechanism orchestrating gene expression networks in many biological processes. Nonetheless, studying the role of specific gene methylation events in fish faces challenges. In this study, we validate the regulation of DNA methylation on empty spiracles homeobox 2 () expression with decitabine treatment in Chinese tongue sole testis cells. We used the gene as the target gene and developed a new DNA methylation editing system by fusing with catalytic dead Cas9 (dCas9) and demonstrated its ability for sequence-specific DNA methylation editing. Results revealed that utilizing dCas9- to target promoter region led to increased DNA methylation levels and decreased expression in Chinese tongue sole testis cells. More importantly, the DNA methylation editing significantly suppressed the expression of MYC proto-oncogene, bHLH transcription factor ), one target gene of . Furthermore, we assessed the off-target effects of dCas9- and confirmed no significant impact on the predicted off-target gene expression. Taken together, we developed the first DNA methylation editing system in marine species and demonstrated its effective editing ability in Chinese tongue sole cells. This provides a new strategy for both epigenetic research and molecular breeding of marine species.

摘要

DNA 甲基化是一种重要的表观遗传机制,它在许多生物学过程中调控基因表达网络。然而,研究鱼类中特定基因甲基化事件的作用面临挑战。在这项研究中,我们使用地西他滨处理中国舌鳎睾丸细胞,验证了 DNA 甲基化对空泡螺旋同源盒 2()表达的调控作用。我们将基因作为靶基因,通过融合与催化失活 Cas9(dCas9)构建了一种新的 DNA 甲基化编辑系统,并证明了其对序列特异性 DNA 甲基化编辑的能力。结果表明,利用 dCas9-靶向基因启动子区域导致中国舌鳎睾丸细胞中的 DNA 甲基化水平升高和表达降低。更重要的是,DNA 甲基化编辑显著抑制了 MYC 原癌基因、bHLH 转录因子()的表达,该基因是基因的一个靶基因。此外,我们评估了 dCas9-的脱靶效应,并证实其对预测的脱靶基因表达没有显著影响。总之,我们在海洋物种中开发了第一个 DNA 甲基化编辑系统,并证明了其在中国舌鳎细胞中的有效编辑能力。这为海洋物种的表观遗传学研究和分子育种提供了一种新策略。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3522/11277268/921faf01c39a/ijms-25-07637-g001.jpg

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