• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

鉴别胶质肉瘤与胶质母细胞瘤:一种使用PEACE和XGBoost处理具有超高维混杂因素数据集的新方法。

Differentiating Gliosarcoma from Glioblastoma: A Novel Approach Using PEACE and XGBoost to Deal with Datasets with Ultra-High Dimensional Confounders.

作者信息

Saki Amir, Faghihi Usef, Baldé Ismaila

机构信息

Département de Mathématiques et d'Informatique, Université du Québec à Trois-Rivières, Trois-Rivières, QC G8Z 4M3, Canada.

Département de Mathématiques et de Statistique, Faculté des Sciences, Université de Moncton, Moncton, NB E1A3E9, Canada.

出版信息

Life (Basel). 2024 Jul 16;14(7):882. doi: 10.3390/life14070882.

DOI:10.3390/life14070882
PMID:39063635
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11278037/
Abstract

In this study, we used a recently developed causal methodology, called Probabilistic Easy Variational Causal Effect (PEACE), to distinguish gliosarcoma (GSM) from glioblastoma (GBM). Our approach uses a causal metric which combines Probabilistic Easy Variational Causal Effect (PEACE) with the XGBoost, or eXtreme Gradient Boosting, algorithm. Unlike prior research, which often relied on statistical models to reduce dataset dimensions before causal analysis, our approach uses the complete dataset with PEACE and the XGBoost algorithm. PEACE provides a comprehensive measurement of direct causal effects, applicable to both continuous and discrete variables. Our method provides both positive and negative versions of PEACE together with their averages to calculate the positive and negative causal effects of the radiomic features on the variable representing the type of tumor (GSM or GBM). In our model, PEACE and its variations are equipped with a degree d which varies from 0 to 1 and it reflects the importance of the rarity and frequency of the events. By using PEACE with XGBoost, we achieved a detailed and nuanced understanding of the causal relationships within the dataset features, facilitating accurate differentiation between GSM and GBM. To assess the XGBoost model, we used cross-validation and obtained a mean accuracy of 83% and an average model MSE of 0.130. This performance is notable given the high number of columns and low number of rows (code on GitHub).

摘要

在本研究中,我们使用了一种最近开发的因果方法,称为概率简易变分因果效应(PEACE),以区分胶质肉瘤(GSM)和胶质母细胞瘤(GBM)。我们的方法使用了一种因果度量,它将概率简易变分因果效应(PEACE)与XGBoost(即极端梯度提升)算法相结合。与以往通常依赖统计模型在因果分析前降低数据集维度的研究不同,我们的方法使用包含PEACE和XGBoost算法的完整数据集。PEACE提供了对直接因果效应的全面度量,适用于连续变量和离散变量。我们的方法提供了PEACE的正负版本及其平均值,以计算影像组学特征对代表肿瘤类型(GSM或GBM)的变量的正负因果效应。在我们的模型中,PEACE及其变体配备了一个从0到1变化的度数d,它反映了事件的稀有性和频率的重要性。通过将PEACE与XGBoost结合使用,我们对数据集中特征之间的因果关系有了详细而细致的理解,有助于准确区分GSM和GBM。为了评估XGBoost模型,我们使用了交叉验证,获得了83%的平均准确率和0.130的平均模型均方误差。考虑到列数多而行数少的情况(代码在GitHub上),这种性能值得注意。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/33cf0fa62489/life-14-00882-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/298643ab4625/life-14-00882-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/c4b9a0d1009e/life-14-00882-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/a656c2e83270/life-14-00882-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/5b1b432b48c9/life-14-00882-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/6a053f808e61/life-14-00882-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/a16d18c1b183/life-14-00882-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/38b93d3e2697/life-14-00882-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/55d7a37b9e9e/life-14-00882-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/33cf0fa62489/life-14-00882-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/298643ab4625/life-14-00882-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/c4b9a0d1009e/life-14-00882-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/a656c2e83270/life-14-00882-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/5b1b432b48c9/life-14-00882-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/6a053f808e61/life-14-00882-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/a16d18c1b183/life-14-00882-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/38b93d3e2697/life-14-00882-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/55d7a37b9e9e/life-14-00882-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f4b7/11278037/33cf0fa62489/life-14-00882-g009.jpg

相似文献

1
Differentiating Gliosarcoma from Glioblastoma: A Novel Approach Using PEACE and XGBoost to Deal with Datasets with Ultra-High Dimensional Confounders.鉴别胶质肉瘤与胶质母细胞瘤:一种使用PEACE和XGBoost处理具有超高维混杂因素数据集的新方法。
Life (Basel). 2024 Jul 16;14(7):882. doi: 10.3390/life14070882.
2
Gliosarcoma: The Distinct Genomic Alterations Identified by Comprehensive Analysis of Copy Number Variations.胶质肉瘤:通过全面分析拷贝数变异鉴定出的独特基因组改变。
Anal Cell Pathol (Amst). 2022 Jun 15;2022:2376288. doi: 10.1155/2022/2376288. eCollection 2022.
3
Clinical outcome of gliosarcoma compared with glioblastoma multiforme: a clinical study in Chinese patients.胶质肉瘤与多形性胶质母细胞瘤的临床结局比较:一项针对中国患者的临床研究
J Neurooncol. 2016 Apr;127(2):355-62. doi: 10.1007/s11060-015-2046-0. Epub 2016 Jan 2.
4
Comparative epidemiology of gliosarcoma and glioblastoma and the impact of Race on overall survival: A systematic literature review.胶质肉瘤和胶质母细胞瘤的比较流行病学以及种族对总生存的影响:系统文献回顾。
Clin Neurol Neurosurg. 2020 Aug;195:106054. doi: 10.1016/j.clineuro.2020.106054. Epub 2020 Jun 29.
5
Secondary gliosarcoma: the clinicopathological features and the development of a patient-derived xenograft model of gliosarcoma.继发性神经胶质肉瘤:神经胶质肉瘤的临床病理特征和患者来源异种移植模型的建立。
BMC Cancer. 2021 Mar 11;21(1):265. doi: 10.1186/s12885-021-08008-y.
6
Gliosarcoma: a clinical and radiological analysis of 48 cases.胶质肉瘤:48 例临床与影像学分析。
Eur Radiol. 2019 Jan;29(1):429-438. doi: 10.1007/s00330-018-5398-y. Epub 2018 Jun 12.
7
Machine Learning-Based Analysis of Magnetic Resonance Radiomics for the Classification of Gliosarcoma and Glioblastoma.基于机器学习的磁共振影像组学分析用于胶质肉瘤和胶质母细胞瘤的分类
Front Oncol. 2021 Aug 20;11:699789. doi: 10.3389/fonc.2021.699789. eCollection 2021.
8
Identification of five important genes to predict glioblastoma subtypes.鉴定五个预测胶质母细胞瘤亚型的重要基因。
Neurooncol Adv. 2021 Oct 10;3(1):vdab144. doi: 10.1093/noajnl/vdab144. eCollection 2021 Jan-Dec.
9
Treatment and survival of patients harboring histological variants of glioblastoma.携带胶质母细胞瘤组织学变体患者的治疗与生存情况
J Clin Neurosci. 2014 Oct;21(10):1709-13. doi: 10.1016/j.jocn.2014.05.003. Epub 2014 Jun 26.
10
Clinical management and survival outcomes of gliosarcomas in the era of multimodality therapy.多模态治疗时代胶质肉瘤的临床管理和生存结果。
J Clin Neurosci. 2014 Mar;21(3):478-81. doi: 10.1016/j.jocn.2013.07.042. Epub 2013 Oct 30.

引用本文的文献

1
Conditional survival and changing risk profile in patients with gliosarcoma.胶质肉瘤患者的条件生存及风险特征变化
Front Med (Lausanne). 2024 Sep 6;11:1443157. doi: 10.3389/fmed.2024.1443157. eCollection 2024.

本文引用的文献

1
High-dimensional generalized median adaptive lasso with application to omics data.适用于组学数据的高维广义中位数自适应套索法
Brief Bioinform. 2024 Jan 22;25(2). doi: 10.1093/bib/bbae059.
2
Mapping the Genetic-Imaging-Clinical Pathway with Applications to Alzheimer's Disease.绘制基因-影像-临床路径及其在阿尔茨海默病中的应用
J Am Stat Assoc. 2022;117(540):1656-1668. doi: 10.1080/01621459.2022.2087658. Epub 2022 Jul 19.
3
Challenges in Glioblastoma Radiomics and the Path to Clinical Implementation.胶质母细胞瘤影像组学面临的挑战及临床应用之路
Cancers (Basel). 2022 Aug 12;14(16):3897. doi: 10.3390/cancers14163897.
4
Evaluation of propensity score methods for causal inference with high-dimensional covariates.高维协变量下因果推断的倾向评分方法评估。
Brief Bioinform. 2022 Jul 18;23(4). doi: 10.1093/bib/bbac227.
5
Ultra-high dimensional variable selection for doubly robust causal inference.超高维变量选择在双重稳健因果推断中的应用。
Biometrics. 2023 Jun;79(2):903-914. doi: 10.1111/biom.13625. Epub 2022 Mar 22.
6
Radiomic Features of Multi-ROI and Multi-Phase MRI for the Prediction of Microvascular Invasion in Solitary Hepatocellular Carcinoma.多感兴趣区和多期磁共振成像的放射组学特征对孤立性肝细胞癌微血管侵犯的预测
Front Oncol. 2021 Oct 7;11:756216. doi: 10.3389/fonc.2021.756216. eCollection 2021.
7
Genomic landscape of gliosarcoma: distinguishing features and targetable alterations.胶质肉瘤的基因组景观:鉴别特征和可靶向改变。
Sci Rep. 2021 Sep 9;11(1):18009. doi: 10.1038/s41598-021-97454-6.
8
Machine Learning-Based Analysis of Magnetic Resonance Radiomics for the Classification of Gliosarcoma and Glioblastoma.基于机器学习的磁共振影像组学分析用于胶质肉瘤和胶质母细胞瘤的分类
Front Oncol. 2021 Aug 20;11:699789. doi: 10.3389/fonc.2021.699789. eCollection 2021.
9
Machine-Learning-Based Radiomics MRI Model for Survival Prediction of Recurrent Glioblastomas Treated with Bevacizumab.基于机器学习的放射组学MRI模型用于预测接受贝伐单抗治疗的复发性胶质母细胞瘤的生存期
Diagnostics (Basel). 2021 Jul 14;11(7):1263. doi: 10.3390/diagnostics11071263.
10
Gliosarcoma: a clinical and radiological analysis of 48 cases.胶质肉瘤:48 例临床与影像学分析。
Eur Radiol. 2019 Jan;29(1):429-438. doi: 10.1007/s00330-018-5398-y. Epub 2018 Jun 12.