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荒漠芽孢杆菌属,新属,新种,是从库姆塔格沙漠土壤中分离到的鞘氨醇单胞菌科的一个新成员。

Desertibaculum subflavum gen. nov., sp. nov., a novel member of the family Sneathiellaceae isolated from the Kumtag Desert soil.

机构信息

State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Stress Biology and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, People's Republic of China.

State Key Laboratory of Desert and Oasis Ecology, Xinjiang Key Laboratory of Biodiversity Conservation and Application in Arid Lands, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, Urumqi, 830011, People's Republic of China.

出版信息

Antonie Van Leeuwenhoek. 2024 Jul 30;117(1):108. doi: 10.1007/s10482-024-02003-6.

Abstract

A novel rod-shaped bacterium, designated as strain SYSU D60015 that formed yellowish colonies was isolated from a sandy soil collected from the Kumtag Desert in Xinjiang, China. Cells were Gram-stain-negative, oxidase-positive, catalase-negative and motile with a single polar flagellum. Growth optimum occurred between 28 and 37 °C, pH 7.0 and with 0-0.5% (W/V) NaCl. The predominant cellular fatty acids (> 5%) were summed feature 8 (C ω7c and/or C ω6c), C cyclo ω8c, C ω7c 11-methyl and C. The polar lipid profile contained one phosphatidylethanolamine, one diphosphatidylglycerol, one phosphatidylglycerol, one unidentified phospholipid, three unidentified aminolipids, two unidentified aminophospholipids and seven unidentified lipids. The only respiratory quinone was ubiquinone-10. Based on 16S rRNA gene sequence phylogenetic analysis, strain SYSU D60015 was found to form a distinct linage within the family Sneathiellaceae, and had 16S rRNA gene sequence similarities of 90.8% to Taonella mepensis H1, and 90.2% to Ferrovibrio denitrificans S3. The genome of SYSU D60015 was 5.66 Mb in size with 68.2% of DNA G + C content. The low digital DNA-DNA hybridization (dDDH, 18.0%), average nucleotide identity (ANI, 77.5%) and amino acid identity (AAI, 56.0%) values between SYSU D60015 and Ferrovibrio terrae K5 indicated that SYSU D60015 might represent a distinct genus. Based on the phylogenetic, phenotypic, chemotaxonomic and genomic data, we propose Desertibaculum subflavum gen. nov., sp. nov. as a novel species of a new genus within the family Sneathiellaceae. The type strain is SYSU D60015 (= NBRC 112952 = CGMCC 1.16256).

摘要

一株新型棒状细菌,被命名为 SYSU D60015 菌株,该菌从中国新疆的库姆塔格沙漠的沙土中分离得到,其形成的菌落呈黄色。细胞革兰氏染色阴性,氧化酶阳性,接触酶阴性,单极鞭毛运动。最适生长温度为 28-37°C,pH 值为 7.0,NaCl 浓度为 0-0.5%(W/V)。主要细胞脂肪酸(>5%)为 C ω7c 和/或 C ω6c 之和、C 环 ω8c、C ω7c 11-甲基和 C 。极性脂谱包含一个磷脂酰乙醇胺、一个双磷脂酰甘油、一个磷脂酰甘油、一个未鉴定的磷脂、三个未鉴定的氨基脂、两个未鉴定的氨基磷脂和七个未鉴定的脂。唯一的呼吸醌是泛醌-10。基于 16S rRNA 基因序列的系统发育分析,SYSU D60015 菌株在 Sneathiellaceae 科内形成一个独特的谱系,与 Taonella mepensis H1 的 16S rRNA 基因序列相似性为 90.8%,与 Ferrovibrio denitrificans S3 的相似性为 90.2%。SYSU D60015 的基因组大小为 5.66 Mb,GC 含量为 68.2%。SYSU D60015 与 Ferrovibrio terrae K5 的 DNA-DNA 杂交值(dDDH,18.0%)、平均核苷酸同一性(ANI,77.5%)和氨基酸同一性(AAI,56.0%)较低,表明 SYSU D60015 可能代表一个独特的属。基于系统发育、表型、化学分类和基因组数据,我们提出了 Desertibaculum subflavum gen. nov.,sp. nov.,作为 Sneathiellaceae 科内一个新属的新种。模式菌株为 SYSU D60015(=NBRC 112952=CGMCC 1.16256)。

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