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植物从蛋白质域到陆地化工具包的进化组装。

Evolutionary assembly of the plant terrestrialization toolkit from protein domains.

机构信息

Department of Applied Bioinformatics, University of Goettingen, Institute for Microbiology and Genetics, Goldschmidtstr. 1, Goettingen 37077, Germany.

University of Goettingen, Campus Institute Data Science (CIDAS), Goldschmidstr. 1, Goettingen 37077, Germany.

出版信息

Proc Biol Sci. 2024 Jul;291(2027):20240985. doi: 10.1098/rspb.2024.0985. Epub 2024 Jul 31.

Abstract

Land plants (embryophytes) came about in a momentous evolutionary singularity: plant terrestrialization. This event marks not only the conquest of land by plants but also the massive radiation of embryophytes into a diverse array of novel forms and functions. The unique suite of traits present in the earliest land plants is thought to have been ushered in by a burst in genomic novelty. Here, we asked the question of how these bursts were possible. For this, we explored: (i) the initial emergence and (ii) the reshuffling of domains to give rise to hallmark environmental response genes of land plants. We pinpoint that a quarter of the embryophytic genes for stress physiology are specific to the lineage, yet a significant portion of this novelty arises not de novo but from reshuffling and recombining of pre-existing domains. Our data suggest that novel combinations of old genomic substrate shaped the plant terrestrialization toolkit, including hallmark processes in signalling, biotic interactions and specialized metabolism.

摘要

陆地植物(胚胎植物)在一个重大的进化奇点中出现:植物的陆生化。这一事件不仅标志着植物对陆地的征服,也标志着胚胎植物大规模辐射到各种新颖的形态和功能。最早的陆地植物所具有的独特特征集被认为是由基因组新奇性的爆发所带来的。在这里,我们提出了这些爆发是如何发生的问题。为此,我们探索了:(i)最初的出现和(ii)结构域的重新排列,以产生陆地植物标志性的环境响应基因。我们发现,四分之一的应激生理学胚胎植物基因是该谱系所特有的,但这种新颖性的很大一部分不是从头开始产生的,而是来自于预先存在的结构域的重新排列和重组。我们的数据表明,旧基因组基质的新组合塑造了植物陆生化工具包,包括信号转导、生物相互作用和特化代谢等标志性过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2abc/11289646/3cbb63b81a94/rspb.2024.0985.f001.jpg

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