Institute of Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goettingen, Germany.
Campus Institute Data Science, University of Goettingen, Goettingen, Germany.
Nat Plants. 2023 Sep;9(9):1419-1438. doi: 10.1038/s41477-023-01491-0. Epub 2023 Aug 28.
Plant terrestrialization brought forth the land plants (embryophytes). Embryophytes account for most of the biomass on land and evolved from streptophyte algae in a singular event. Recent advances have unravelled the first full genomes of the closest algal relatives of land plants; among the first such species was Mesotaenium endlicherianum. Here we used fine-combed RNA sequencing in tandem with a photophysiological assessment on Mesotaenium exposed to a continuous range of temperature and light cues. Our data establish a grid of 42 different conditions, resulting in 128 transcriptomes and 1.5 Tbp (9.9 billion reads) of data to study the combinatory effects of stress response using clustering along gradients. Mesotaenium shares with land plants major hubs in genetic networks underpinning stress response and acclimation. Our data suggest that lipid droplet formation and plastid and cell wall-derived signals have denominated molecular programmes since more than 600 million years of streptophyte evolution-before plants made their first steps on land.
植物的陆生化造就了陆地植物(胚植物)。胚植物占据了陆地生物量的大部分,并在一个单一的事件中从石松类藻类进化而来。最近的进展揭示了与陆地植物最接近的藻类近亲的首个完整基因组;第一批此类物种之一是 Mesotaenium endlicherianum。在这里,我们使用精细梳理的 RNA 测序与对 Mesotaenium 在连续温度和光照线索下暴露的光生理评估相结合。我们的数据建立了一个由 42 种不同条件组成的网格,产生了 128 个转录组和约 1.5 Tbp(约 99 亿个读数)的数据,用于使用聚类沿着梯度研究应激反应的组合效应。Mesotaenium 与陆地植物在遗传网络中共享主要枢纽,这些网络是应激反应和适应的基础。我们的数据表明,自 6 亿多年前石松类进化以来——在植物首次在陆地上迈出第一步之前——脂滴形成以及质体和细胞壁衍生的信号已经确定了分子程序。