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温度调节转录组学:温度依赖性可变剪接的分子基础和生物学意义。

Thermoregulated transcriptomics: the molecular basis and biological significance of temperature-dependent alternative splicing.

机构信息

Freie Universität Berlin, Institute of Chemistry and Biochemistry, Laboratory of RNA Biochemistry, Takustrasse 6, 14195 Berlin, Germany.

出版信息

Biochem J. 2024 Aug 7;481(15):999-1013. doi: 10.1042/BCJ20230410.

DOI:10.1042/BCJ20230410
PMID:39083035
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11346455/
Abstract

Temperature-dependent alternative splicing (AS) is a crucial mechanism for organisms to adapt to varying environmental temperatures. In mammals, even slight fluctuations in body temperature are sufficient to drive significant AS changes in a concerted manner. This dynamic regulation allows organisms to finely tune gene expression and protein isoform diversity in response to temperature cues, ensuring proper cellular function and physiological adaptation. Understanding the molecular mechanisms underlying temperature-dependent AS thus provides valuable insights into the intricate interplay between environmental stimuli and gene expression regulation. In this review, we provide an overview of recent advances in understanding temperature-regulated AS across various biological processes and systems. We will discuss the machinery sensing and translating temperature cues into changed AS patterns, the adaptation of the splicing regulatory machinery to extreme temperatures, the role of temperature-dependent AS in shaping the transcriptome, functional implications and the development of potential therapeutics targeting temperature-sensitive AS pathways.

摘要

温度依赖的可变剪接(AS)是生物体适应环境温度变化的关键机制。在哺乳动物中,即使体温稍有波动,也足以协同驱动显著的 AS 变化。这种动态调节使生物体能够根据温度线索精细地调整基因表达和蛋白质同工型多样性,确保细胞功能和生理适应的正常进行。因此,理解温度依赖的 AS 的分子机制为深入了解环境刺激与基因表达调控之间的复杂相互作用提供了有价值的见解。在这篇综述中,我们概述了在理解各种生物过程和系统中温度调节的 AS 方面的最新进展。我们将讨论感知温度线索并将其转化为 AS 模式变化的机制、剪接调控机制对极端温度的适应、温度依赖的 AS 在构建转录组中的作用、功能意义以及针对温度敏感的 AS 途径的潜在治疗方法的开发。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/509f1c8e54f6/BCJ-481-999-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/00d9d0cdc3f3/BCJ-481-999-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/7ced1a150db5/BCJ-481-999-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/6c6a92dfb33a/BCJ-481-999-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/8e5bec3c2a8a/BCJ-481-999-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/509f1c8e54f6/BCJ-481-999-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/00d9d0cdc3f3/BCJ-481-999-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/7ced1a150db5/BCJ-481-999-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/6c6a92dfb33a/BCJ-481-999-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/8e5bec3c2a8a/BCJ-481-999-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/21df/11346455/509f1c8e54f6/BCJ-481-999-g0005.jpg

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Nucleic Acids Res. 2023 Nov 10;51(20):11386-11400. doi: 10.1093/nar/gkad816.
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HNRNPH1 regulates the neuroprotective cold-shock protein RBM3 expression through poison exon exclusion.HNRNPH1 通过排除毒性外显子来调节神经保护冷休克蛋白 RBM3 的表达。
EMBO J. 2023 Jul 17;42(14):e113168. doi: 10.15252/embj.2022113168. Epub 2023 May 30.
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ASO targeting RBM3 temperature-controlled poison exon splicing prevents neurodegeneration in vivo.
ASO 靶向 RBM3 温度控制的外显子剪接可防止体内神经退行性变。
EMBO Mol Med. 2023 May 8;15(5):e17157. doi: 10.15252/emmm.202217157. Epub 2023 Mar 22.
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Modulation of pre-mRNA structure by hnRNP proteins regulates alternative splicing of .hnRNP 蛋白对 pre-mRNA 结构的调节控制着 的可变剪接。
Sci Adv. 2022 Aug 5;8(31):eabp9153. doi: 10.1126/sciadv.abp9153. Epub 2022 Aug 3.
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Relevance and Regulation of Alternative Splicing in Plant Heat Stress Response: Current Understanding and Future Directions.植物热胁迫响应中可变剪接的相关性与调控:当前认识与未来方向
Front Plant Sci. 2022 Jun 23;13:911277. doi: 10.3389/fpls.2022.911277. eCollection 2022.
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