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黄杆菌属新种,分离自淡水溪流。

Flavobacterium rivulicola sp. nov., Isolated from a Freshwater Stream.

机构信息

Department of Biological Sciences and Bioengineering, Inha University, Incheon, 22212, Republic of Korea.

Department of Biological Sciences, Center for Molecular and Cell Biology, Inha University, Incheon, 22212, Republic of Korea.

出版信息

Curr Microbiol. 2024 Jul 31;81(9):290. doi: 10.1007/s00284-024-03814-6.

Abstract

A Gram-strain-negative, aerobic, yellow-colored, non-motile, and rod-shaped bacterial strain, designated IMCC34852, was isolated from a freshwater stream in the Republic of Korea. Cellular growth occurred at 10-37 °C, pH 6.0-9.0, and with 0-0.5% (w/v) NaCl. The 16S rRNA gene sequence analysis showed that strain IMCC34852 belonged to the genus Flavobacterium and that the strain was most closely related to F. cheonhonense ARSA-15 (97.6%), F. buctense T7 (96.7%), F. silvisoli RD-2-33 (96.1%), and F. paronense KNUS1 (96.1%). The whole-genome sequence of strain IMCC34852 was 3.2 Mbp in size, with a DNA G + C content 37.3%. The average nucleotide identities (ANI) and digital DNA-DNA hybridization (dDDH) values between strain IMCC34852 and its related species were all below 79.8% and 22.7%, respectively, which are significantly lower than the thresholds of 95% for ANI and 70% for DDH for species delineation. The major respiratory quinone of strain IMCC34852 was menaquinone-6 (MK-6) and the predominant cellular fatty acids were iso-C (32.6%), iso-C (11.7%), iso-C G (10.3%), and iso-C (6.7%). The major polar lipids of the strain were phosphatidylethanolamine, two unidentified aminolipids and six unidentified lipids. Based on these results, it was concluded that strain IMCC34852 represents a novel species in the genus Flavobacterium, for which the name Flavobacterium rivulicola sp. nov is proposed. The type strain of the proposed novel species is IMCC34852 (= KACC 23133 = KCTC 82066 = NBRC 114419).

摘要

一株革兰氏阴性、需氧、黄色、非运动、杆状的细菌菌株,被命名为 IMCC34852,从韩国一条淡水溪流中分离得到。细胞生长的温度范围为 10-37°C,pH 值范围为 6.0-9.0,盐度范围为 0-0.5%(w/v)。16S rRNA 基因序列分析表明,菌株 IMCC34852 属于黄杆菌属,与 F. cheonhonense ARSA-15(97.6%)、F. buctense T7(96.7%)、F. silvisoli RD-2-33(96.1%)和 F. paronense KNUS1(96.1%)最为密切相关。菌株 IMCC34852 的全基因组序列大小为 3.2 Mbp,G+C 含量为 37.3%。菌株 IMCC34852 与其相关种的平均核苷酸同一性(ANI)和数字 DNA-DNA 杂交(dDDH)值均低于 79.8%和 22.7%,明显低于种间划分的 95%ANI 和 70%dDDH 阈值。菌株 IMCC34852 的主要呼吸醌为menaquinone-6 (MK-6),主要细胞脂肪酸为 iso-C(32.6%)、iso-C(11.7%)、iso-C G(10.3%)和 iso-C(6.7%)。该菌株的主要极性脂为磷脂酰乙醇胺、两种未鉴定的氨基脂和六种未鉴定的脂类。基于这些结果,认为菌株 IMCC34852 代表黄杆菌属的一个新种,将其命名为 Flavobacterium rivulicola sp. nov。该新种的模式菌株为 IMCC34852(=KACC 23133=KCTC 82066=NBRC 114419)。

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