• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

费纳-马修斯-奥尔森复合物中热无序和静态无序共存下激子动力学的时域密度矩阵重整化群研究

TD-DMRG Study of Exciton Dynamics with both Thermal and Static Disorders for Fenna-Matthews-Olson Complex.

作者信息

Sheng Zirui, Jiang Tong, Li Weitang, Shuai Zhigang

机构信息

School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen 518172, P. R. China.

MOE Key Laboratory of Organic OptoElectronics and Molecular Engineering, Department of Chemistry, Tsinghua University, 100084 Beijing, P. R. China.

出版信息

J Chem Theory Comput. 2024 Aug 13;20(15):6470-6484. doi: 10.1021/acs.jctc.4c00493. Epub 2024 Aug 1.

DOI:10.1021/acs.jctc.4c00493
PMID:39087905
Abstract

Photosynthesis is a fundamental process that converts solar energy into chemical energy. Understanding the microscopic mechanisms of energy transfer in photosynthetic systems is crucial for the development of novel optoelectronic materials. Simulating these processes poses significant challenges due to the intricate interactions between electrons and phonons, compounded by static disorder. In this work, we present a numerically nearly exact study using the time-dependent density matrix renormalization group (TD-DMRG) method to simulate the quantum dynamics of the Fenna-Matthews-Olson (FMO) complex considering an eight-site model with both thermal and static disorders. We employ the thermo-field dynamics formalism for temperature effects. We merge all electronic interactions into one large matrix product state (MPS) site, boosting accuracy efficiently without increasing complexity. Previous combined experimental and computational studies indicated that the static disorders range from 30 to 90 cm for different FMO sites. We employ a Gaussian distribution and the auxiliary bosonic operator approach to consider the static disorder in our TD-DMRG algorithm. We investigate the impact of different initial excitation sites, temperatures, and degrees of static disorder on the exciton dynamics and temporal coherence. It is found that under the influence of the experimentally determined static disorder strength, the exciton population evolution shows a non-negligible difference at zero temperature, while it is hardly affected at room temperature.

摘要

光合作用是一个将太阳能转化为化学能的基本过程。理解光合系统中能量转移的微观机制对于新型光电子材料的开发至关重要。由于电子与声子之间复杂的相互作用,再加上静态无序,模拟这些过程面临着重大挑战。在这项工作中,我们使用含时密度矩阵重整化群(TD-DMRG)方法进行了一项数值上近乎精确的研究,以模拟费纳-马修斯-奥尔森(FMO)复合物的量子动力学,该研究考虑了一个具有热无序和静态无序的八位点模型。我们采用热场动力学形式来处理温度效应。我们将所有电子相互作用合并到一个大的矩阵乘积态(MPS)位点中,在不增加复杂性的情况下有效地提高了精度。先前的实验和计算相结合的研究表明,不同FMO位点的静态无序范围为30至90厘米。我们在TD-DMRG算法中采用高斯分布和辅助玻色子算符方法来考虑静态无序。我们研究了不同初始激发位点、温度和静态无序程度对激子动力学和时间相干性的影响。研究发现,在实验确定的静态无序强度影响下,激子布居演化在零温度下显示出不可忽略的差异,而在室温下几乎不受影响。

相似文献

1
TD-DMRG Study of Exciton Dynamics with both Thermal and Static Disorders for Fenna-Matthews-Olson Complex.费纳-马修斯-奥尔森复合物中热无序和静态无序共存下激子动力学的时域密度矩阵重整化群研究
J Chem Theory Comput. 2024 Aug 13;20(15):6470-6484. doi: 10.1021/acs.jctc.4c00493. Epub 2024 Aug 1.
2
Numerical assessment for accuracy and GPU acceleration of TD-DMRG time evolution schemes.数值评估 TD-DMRG 时间演化方案的准确性和 GPU 加速。
J Chem Phys. 2020 Jan 14;152(2):024127. doi: 10.1063/1.5135363.
3
Optimization of exciton currents in photosynthetic systems.优化光合系统中的激子电流。
J Chem Phys. 2013 Mar 21;138(11):115102. doi: 10.1063/1.4795204.
4
Environment-assisted quantum walks in photosynthetic energy transfer.光合作用能量转移中的环境辅助量子行走。
J Chem Phys. 2008 Nov 7;129(17):174106. doi: 10.1063/1.3002335.
5
Impact of Spatial Inhomogeneity on Excitation Energy Transport in the Fenna-Matthews-Olson Complex.空间不均匀性对芬纳-马修斯-奥尔森复合物中激发能传输的影响。
J Phys Chem B. 2023 Sep 14;127(36):7663-7673. doi: 10.1021/acs.jpcb.3c03062. Epub 2023 Aug 30.
6
Transient Chiral Dynamics in the Fenna-Matthews-Olson Complex Revealed by Two-Dimensional Circular Dichroism Spectroscopy.二维圆二色光谱揭示芬纳-马修斯-奥尔森复合物中的瞬态手性动力学
J Phys Chem Lett. 2024 Jun 27;15(25):6550-6559. doi: 10.1021/acs.jpclett.4c01179. Epub 2024 Jun 17.
7
Effects of Heterogeneous Protein Environment on Excitation Energy Transfer Dynamics in the Fenna-Matthews-Olson Complex.异质蛋白质环境对芬纳-马修斯-奥尔森复合物中激发能转移动力学的影响。
J Phys Chem B. 2022 Nov 17;126(45):9271-9287. doi: 10.1021/acs.jpcb.2c06605. Epub 2022 Nov 3.
8
Excited state energy fluctuations in the Fenna-Matthews-Olson complex from molecular dynamics simulations with interpolated chromophore potentials.利用插值发色团势的分子动力学模拟研究芬纳-马修斯-奥尔森复合物中的激发态能量涨落
Phys Chem Chem Phys. 2018 Jan 31;20(5):3310-3319. doi: 10.1039/c7cp06303b.
9
Effect of Spectral Density Shapes on the Excitonic Structure and Dynamics of the Fenna-Matthews-Olson Trimer from Chlorobaculum tepidum.光谱密度形状对嗜温绿菌属芬纳-马修斯-奥尔森三聚体的激子结构和动力学的影响
J Phys Chem A. 2016 Aug 11;120(31):6146-54. doi: 10.1021/acs.jpca.6b03107. Epub 2016 Aug 1.
10
Probing the excitonic landscape of the Chlorobaculum tepidum Fenna-Matthews-Olson (FMO) complex: a mutagenesis approach.探究嗜热盐杆菌 Fenna-Matthews-Olson (FMO) 复合物的激子景观:一种诱变方法。
Biochim Biophys Acta Bioenerg. 2017 Apr;1858(4):288-296. doi: 10.1016/j.bbabio.2017.01.011. Epub 2017 Jan 31.

引用本文的文献

1
QCMaquis 4.0: Multipurpose Electronic, Vibrational, and Vibronic Structure and Dynamics Calculations with the Density Matrix Renormalization Group.QCMaquis 4.0:使用密度矩阵重整化群进行多用途电子、振动和振子结构及动力学计算
J Phys Chem A. 2025 Aug 14;129(32):7549-7574. doi: 10.1021/acs.jpca.5c02970. Epub 2025 Aug 1.
2
Real-Time CASSCF (Ehrenfest) Modeling of Electron Dynamics in Organic Semiconductors. Dynamics Reaction Paths Driven by Quantum Coherences. Application to a Radical Organic Semiconductor.有机半导体中电子动力学的实时CASSCF(埃伦费斯特)建模。由量子相干驱动的动力学反应路径。应用于自由基有机半导体。
J Phys Chem A. 2024 Dec 12;128(49):10555-10567. doi: 10.1021/acs.jpca.4c06466. Epub 2024 Nov 27.