School of Life and Health Sciences, Hunan University of Science and Technology, Xiangtan, 411201, China.
Hunan Yige Pharmaceutical Co., Ltd, Xiangtan, 411100, China.
Curr Microbiol. 2024 Aug 1;81(9):292. doi: 10.1007/s00284-024-03820-8.
The taxonomic relationship between Streptomyces violarus and Streptomyces violaceus was reevaluated using a polyphasic taxonomic approach in this work. Phylogenetic analysis based on 16S rRNA gene sequences indicated that Streptomyces violarus JCM 4534 was closely related to Streptomyces arenae ISP 5293. However, phylogenetic analysis based on five house-keeping gene (atpD, gyrB, recA, rpoB and trpB) showed that the evolutionary neighbor of Streptomyces violarus JCM 4534 was Streptomyces violaceus CGMCC 4.1456, suggesting that there was a close genetic relationship between these two strains. The average nucleotide identity and digital DNA-DNA hybridization values between them were 97.0 and 72.9%, respectively, greater than the 96.7 and 70% cut-off points recommended for delineating a Streptomyces species. This result indicated that they belonged to the same genomic species which was also verified by a comprehensive comparison of phenotypic and chemotaxonomic characteristics between Streptomyces violarus JCM 4534 and Streptomyces violaceus CGMCC 4.1456. According to all these data and the rule of priority in nomenclature, it is proposed the Streptomyces violarus (Artamonova and Krassilnikov 1960) Pridham 1970 is a later heterotypic synonym of Streptomyces violaceus (Rossi Doria 1891) Waksman 1953. In addition, based on dDDH, Streptomyces violaceus and Streptomyces violarus are simultaneously designated as two different subspecies, i.e., Streptomyces violaceus subsp. violaceus and Streptomyces violaceus subsp. violarus.
本研究采用多相分类方法重新评估了黄色糖多孢菌(Streptomyces violarus)和紫色糖多孢菌(Streptomyces violaceus)之间的分类关系。基于 16S rRNA 基因序列的系统发育分析表明,黄色糖多孢菌 JCM 4534 与链霉菌属(Streptomyces)ISP 5293 亲缘关系较近。然而,基于五个管家基因(atpD、gyrB、recA、rpoB 和 trpB)的系统发育分析表明,黄色糖多孢菌 JCM 4534 的进化近邻是紫色糖多孢菌 CGMCC 4.1456,表明这两个菌株之间存在密切的遗传关系。它们之间的平均核苷酸同一性和数字 DNA-DNA 杂交值分别为 97.0%和 72.9%,均大于 96.7%和 70%的分类切点,这表明它们属于同一个基因组种。黄色糖多孢菌 JCM 4534 和紫色糖多孢菌 CGMCC 4.1456 的表型和化学分类特征的综合比较也验证了这一结果。根据所有这些数据和命名法的优先规则,建议将黄色糖多孢菌(Artamonova 和 Krassilnikov 1960)Pridham 1970 作为紫色糖多孢菌(Rossi Doria 1891)Waksman 1953 的晚异名。此外,基于 dDDH,紫色糖多孢菌和黄色糖多孢菌同时被指定为两个不同的亚种,即紫色糖多孢菌紫色亚种和紫色糖多孢菌黄色亚种。