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用于基因组编辑的最小生物颗粒的机制导向工程

Mechanism-guided engineering of a minimal biological particle for genome editing.

作者信息

Ngo Wayne, Peukes Julia T, Baldwin Alisha, Xue Zhiwei Wayne, Hwang Sidney, Stickels Robert R, Lin Zhi, Satpathy Ansuman T, Wells James A, Schekman Randy, Nogales Eva, Doudna Jennifer A

机构信息

Innovative Genomics Institute; University of California, Berkeley; Berkeley CA, USA.

Gladstone Institutes; San Francisco, CA, USA.

出版信息

bioRxiv. 2024 Jul 24:2024.07.23.604809. doi: 10.1101/2024.07.23.604809.

Abstract

The widespread application of genome editing to treat or even cure disease requires the delivery of genome editors into the nucleus of target cells. Enveloped Delivery Vehicles (EDVs) are engineered virally-derived particles capable of packaging and delivering CRISPR-Cas9 ribonucleoproteins (RNPs). However, the presence of lentiviral genome encapsulation and replication components in EDVs has obscured the underlying delivery mechanism and precluded particle optimization. Here we show that Cas9 RNP nuclear delivery is independent of the native lentiviral capsid structure. Instead, EDV-mediated genome editing activity corresponds directly to the number of nuclear localization sequences on the Cas9 enzyme. EDV structural analysis using cryo-electron tomography and small molecule inhibitors guided the removal of ~80% of viral residues, creating a minimal EDV (miniEDV) that retains full RNP delivery capability. MiniEDVs are 25% smaller yet package equivalent amounts of Cas9 RNPs relative to the original EDVs, and demonstrated increased editing in cell lines and therapeutically-relevant primary human T cells. These results show that virally-derived particles can be streamlined to create efficacious genome editing delivery vehicles that could simplify production and manufacturing.

摘要

基因组编辑在治疗甚至治愈疾病方面的广泛应用需要将基因组编辑器递送至靶细胞的细胞核。包膜递送载体(EDV)是经过工程改造的病毒衍生颗粒,能够包装并递送CRISPR-Cas9核糖核蛋白(RNP)。然而,EDV中慢病毒基因组封装和复制成分的存在掩盖了潜在的递送机制,并阻碍了颗粒的优化。在此我们表明,Cas9 RNP的细胞核递送独立于天然慢病毒衣壳结构。相反,EDV介导的基因组编辑活性直接对应于Cas9酶上核定位序列的数量。使用冷冻电子断层扫描和小分子抑制剂进行的EDV结构分析指导去除了约80%的病毒残基,从而产生了一种最小化的EDV(miniEDV),它保留了完整的RNP递送能力。相对于原始EDV,MiniEDV小25%,但包装的Cas9 RNP量相当,并且在细胞系和治疗相关的原代人T细胞中显示出更高的编辑效率。这些结果表明,可以对病毒衍生颗粒进行简化,以创建有效的基因组编辑递送载体,从而简化生产和制造过程。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/027d/11291128/8efaaebee0d8/nihpp-2024.07.23.604809v1-f0001.jpg

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