School of Pharmacy, Kitasato University, 5-9-1 Shirokane, Minato-Ku, Tokyo, 108-8641, Japan.
Oriental Medicine Therapy Center, Kitasato Institute Hospital, Kitasato University, 5-9-1 Shirokane, Minato-Ku, Tokyo, 108-8641, Japan.
J Nat Med. 2024 Sep;78(4):952-969. doi: 10.1007/s11418-024-01837-8. Epub 2024 Aug 3.
This study established an Orthogonal Partial Least Squares (OPLS) model combining H-NMR and GC-MS data to identify characteristic metabolites in complex extracts. Both in metabolomics studies, and natural product chemistry, the reliable identification of marker metabolites usually requires laborious isolation and purification steps, which remains a bottleneck in many studies. Both ginger (GR) and processed ginger (PGR) are listed in the Japanese pharmacopeia. The plant of origin, the rhizome of Zingiber officinale Roscoe, is differently processed for these crude drugs. Notably, the quality of crude drugs is affected by genetic and environmental factors, making it difficult to maintain a certain quality standard. Therefore, characteristic markers for the quality control of GR and PGR are required. Metabolomic analysis using H-NMR was able to discriminate between GR and PGR, but there were unidentified signals that were difficult to distinguish based on NMR data alone. Therefore, we combined H-NMR and GC-MS analytical data to identify them by OPLS. As a result, αr-curcumene was found to be a useful marker for these identifications. This new approach enabled rapid identification of characteristic marker compounds and reduced the labor involved in the isolation process.
本研究建立了一种结合 H-NMR 和 GC-MS 数据的正交偏最小二乘(OPLS)模型,以鉴定复杂提取物中的特征代谢物。在代谢组学研究和天然产物化学中,可靠地鉴定标志物代谢物通常需要繁琐的分离和纯化步骤,这在许多研究中仍然是一个瓶颈。生姜(GR)和炮制生姜(PGR)均被列入日本药典。这些原料药的植物来源为姜科植物姜 Zingiber officinale Roscoe 的根茎,其加工方式不同。值得注意的是,原料药的质量受到遗传和环境因素的影响,难以维持一定的质量标准。因此,需要有特征标志物来控制 GR 和 PGR 的质量。使用 H-NMR 的代谢组学分析能够区分 GR 和 PGR,但存在难以仅根据 NMR 数据区分的未识别信号。因此,我们结合了 H-NMR 和 GC-MS 分析数据,通过 OPLS 进行鉴定。结果发现,αr-姜烯是这些鉴定的有用标志物。这种新方法能够快速鉴定特征标记化合物,并减少分离过程中的劳动量。