Ma Ling, Duan Yuange, Wu Yunfei, Yang Hailin, Deng Haibin, Liu Xinzhi, Zhao Tianyou, Zhao Yisheng, Tian Li, Song Fan, Sota Teiji, Cai Wanzhi, Li Hu
Department of Entomology and MOA Key Lab of Pest Monitoring and Green Management, College of Plant Protection, China Agricultural University, Beijing 100193, China.
College of Biology and Food Engineering, Chuzhou University, Chuzhou 239000, China.
iScience. 2024 Jun 28;27(8):110411. doi: 10.1016/j.isci.2024.110411. eCollection 2024 Aug 16.
Genetic basis underlying the biodiversity and phenotypic plasticity are fascinating questions in evolutionary biology. Such molecular diversity can be achieved at multi-omics levels. Here, we sequenced the first chromosome-level genome of assassin bug , a polyphagous generalist predator for biological control of agroecosystems. Compared to non-predatory true bugs and , the -specific genes were enriched in diet-related genes (e.g., serine proteinase, cytochrome P450) which had higher expression level and more exons than non-diet genes. Extensive A-to-I RNA editing was identified in all three species and showed enrichment in genes associated with diet in , diversifying the transcriptome. An extended analysis between five predaceous and 27 phytophagous hemipteran species revealed an expansion of diet-related genes in . Our findings bridge the gap between genotype and phenotype, and also advance our understanding on genetic and epigenetic bases governing the diet shifts in ture bugs.
生物多样性和表型可塑性背后的遗传基础是进化生物学中引人入胜的问题。这种分子多样性可以在多组学水平上实现。在这里,我们对猎蝽的首个染色体水平基因组进行了测序,猎蝽是一种多食性广食性捕食者,用于农业生态系统的生物防治。与非捕食性椿象相比,猎蝽特有的基因在与饮食相关的基因(如丝氨酸蛋白酶、细胞色素P450)中富集,这些基因比非饮食基因具有更高的表达水平和更多的外显子。在所有三个物种中都鉴定出了广泛的A到I RNA编辑,并且在猎蝽中显示出与饮食相关基因的富集,使转录组多样化。对五个捕食性半翅目物种和27个植食性半翅目物种的扩展分析揭示了猎蝽中与饮食相关基因的扩张。我们的发现弥合了基因型和表型之间的差距,也推进了我们对控制椿象饮食转变的遗传和表观遗传基础的理解。