Department of Bioengineering, University of California, Berkeley, California.
Ontario Institute for Cancer Research, Toronto, Ontario, Canada.
Curr Protoc. 2024 Aug;4(8):e1120. doi: 10.1002/cpz1.1120.
JBrowse 2 is a modular genome browser that can visualize many common genomic file formats. While JBrowse 2 supports a variety of different usages, it is particularly suited for deployment on websites, such as model organism databases or other web-based genomic data resources. This protocol provides detailed instructions for setting up JBrowse 2 on an Ubuntu Linux web server, loading a reference genome from a FASTA format file, and adding a gene annotation track from a GFF3 format file. By the end of the protocol, users will have a working JBrowse 2 instance that is accessible via the web. © 2024 The Author(s). Current Protocols published by Wiley Periodicals LLC. Basic Protocol: Setting up JBrowse 2 on your web server.
JBrowse 2 是一个模块化的基因组浏览器，可以可视化许多常见的基因组文件格式。虽然 JBrowse 2 支持多种不同的用途，但它特别适合在网站上部署，例如模式生物数据库或其他基于网络的基因组数据资源。本协议提供了在 Ubuntu Linux 网络服务器上设置 JBrowse 2、从 FASTA 格式文件加载参考基因组以及从 GFF3 格式文件添加基因注释轨道的详细说明。通过本协议，用户将拥有一个可通过网络访问的工作 JBrowse 2 实例。© 2024 作者。Wiley Periodicals LLC 出版的《当代协议》。基本方案：在您的网络服务器上设置 JBrowse 2。
