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一种从分子动力学模拟计算溶剂宽带介电谱的新方法,采用可极化力场进行了演示。

A new method to calculate broadband dielectric spectra of solvents from molecular dynamics simulations demonstrated with polarizable force fields.

作者信息

Bone Rebecca A, Chung Moses K J, Ponder Jay W, Riccardi Demian, Muzny Chris, Sundararaman Ravishankar, Schwarz Kathleen

机构信息

Theiss Research, P.O. Box 127, La Jolla, California 92038, USA.

Material Measurement Laboratory, National Institute of Standards and Technology, 100 Bureau Dr., Gaithersburg, Maryland 20899, USA.

出版信息

J Chem Phys. 2024 Aug 14;161(6). doi: 10.1063/5.0217883.

DOI:10.1063/5.0217883
PMID:39132799
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11324330/
Abstract

Simulating the dielectric spectra of solvents requires the nuanced definition of inter- and intra-molecular forces. Non-polarizable force fields, while thoroughly benchmarked for dielectric applications, do not capture all the spectral features of solvents, such as water. Conversely, polarizable force fields have been largely untested in the context of dielectric spectroscopy but include charge and dipole fluctuations that contribute to intermolecular interactions. We benchmark non-polarizable force fields and the polarizable force fields AMOEBA03 and HIPPO for liquid water and find that the polarizable force fields can capture all the experimentally observed spectral features with varying degrees of accuracy. However, the non-polarizable force fields miss at least one peak. To diagnose this deficiency, we decompose the liquid water spectra from polarizable force fields at multiple temperatures into static and induced dipole contributions and find that the peak originates from induced dipole contributions. Broadening our inquiry to other solvents parameterized with the AMOEBA09 force field, we demonstrate good agreement between the experimental and simulated dielectric spectra of methanol and formamide. To produce these spectra, we develop a new computational approach to calculate the dielectric spectrum via the fluctuation dissipation theorem. This method minimizes the error in both the low and high frequency portions of the spectrum, improving the overall accuracy of the simulated spectrum and broadening the computed frequency range.

摘要

模拟溶剂的介电谱需要对分子间和分子内作用力进行细致的定义。非极化力场虽然在介电应用方面经过了全面的基准测试,但无法捕捉到溶剂的所有光谱特征,如水的光谱特征。相反,极化力场在介电光谱的背景下基本上未经测试,但包含有助于分子间相互作用的电荷和偶极子波动。我们对液态水的非极化力场以及极化力场AMOEBA03和HIPPO进行了基准测试,发现极化力场能够以不同程度的精度捕捉到所有实验观察到的光谱特征。然而,非极化力场至少遗漏了一个峰。为了诊断这一缺陷,我们将多个温度下极化力场的液态水光谱分解为静态和诱导偶极子贡献,发现该峰源于诱导偶极子贡献。将我们的研究扩展到用AMOEBA09力场参数化的其他溶剂,我们证明了甲醇和甲酰胺的实验和模拟介电谱之间具有良好的一致性。为了生成这些光谱,我们开发了一种新的计算方法,通过涨落耗散定理来计算介电谱。这种方法将光谱低频和高频部分的误差降至最低,提高了模拟光谱的整体精度,并拓宽了计算频率范围。

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J Chem Theory Comput. 2023 May 23;19(10):2906-2917. doi: 10.1021/acs.jctc.3c00278. Epub 2023 May 2.
3
Simulating dielectric spectra: A demonstration of the direct electric field method and a new model for the nonlinear dielectric response.模拟介电谱:直接电场法的演示及非线性介电响应的新模型。
J Chem Phys. 2023 Mar 28;158(12):124122. doi: 10.1063/5.0143425.
4
The collective burst mechanism of angular jumps in liquid water.液体水中角跳的集体爆发机制。
Nat Commun. 2023 Mar 11;14(1):1345. doi: 10.1038/s41467-023-37069-9.
5
Dielectric Properties of Nanoconfined Water from Thermopotentiostat Molecular Dynamics.介电特性的纳米受限水从 thermopotentiostat 分子动力学。
J Chem Theory Comput. 2023 Feb 14;19(3):1035-1043. doi: 10.1021/acs.jctc.2c00959. Epub 2023 Jan 27.
6
Accurate global machine learning force fields for molecules with hundreds of atoms.具有数百个原子的分子的精确全局机器学习力场。
Sci Adv. 2023 Jan 13;9(2):eadf0873. doi: 10.1126/sciadv.adf0873. Epub 2023 Jan 11.
7
Improving Condensed-Phase Water Dynamics with Explicit Nuclear Quantum Effects: The Polarizable Q-AMOEBA Force Field.通过显式核量子效应改善凝聚相水动力学:极化 Q-AMOEBA 力场。
J Phys Chem B. 2022 Nov 3;126(43):8813-8826. doi: 10.1021/acs.jpcb.2c04454. Epub 2022 Oct 21.
8
Molecular Simulations of Aqueous Electrolytes: Role of Explicit Inclusion of Charge Transfer into Force Fields.水溶液电解质的分子模拟:力场中明确纳入电荷转移的作用。
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9
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10
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Phys Chem Chem Phys. 2021 Sep 29;23(37):20875-20882. doi: 10.1039/d1cp03507j.