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基因组挖掘与合成生物学在天然产物发现与生物合成方面的最新进展。

Recent advances in genome mining and synthetic biology for discovery and biosynthesis of natural products.

作者信息

Wang Mingpeng, Chen Lei, Zhang Zhaojie, Wang Qinhong

机构信息

School of Life Sciences, Qufu Normal University, Qufu, China.

Key Laboratory of Engineering Biology for Low-carbon Manufacturing, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.

出版信息

Crit Rev Biotechnol. 2025 Feb;45(1):236-256. doi: 10.1080/07388551.2024.2383754. Epub 2024 Aug 12.

Abstract

Natural products have long served as critical raw materials in chemical and pharmaceutical manufacturing, primarily which can provide superior scaffolds or intermediates for drug discovery and development. Over the last century, natural products have contributed to more than a third of therapeutic drug production. However, traditional methods of producing drugs from natural products have become less efficient and more expensive over the past few decades. The combined utilization of genome mining and synthetic biology based on genome sequencing, bioinformatics tools, big data analytics, genetic engineering, metabolic engineering, and systems biology promises to counter this trend. Here, we reviewed recent (2020-2023) examples of genome mining and synthetic biology used to resolve challenges in the production of natural products, such as less variety, poor efficiency, and low yield. Additionally, the emerging efficient tools, design principles, and building strategies of synthetic biology and its application prospects in NPs synthesis have also been discussed.

摘要

长期以来,天然产物一直是化学和制药制造中的关键原材料,主要是因为它们可以为药物发现和开发提供优质的骨架或中间体。在过去的一个世纪里,天然产物对超过三分之一的治疗药物生产做出了贡献。然而,在过去几十年中,从天然产物中生产药物的传统方法效率越来越低,成本越来越高。基于基因组测序、生物信息学工具、大数据分析、基因工程、代谢工程和系统生物学的基因组挖掘和合成生物学的联合应用有望扭转这一趋势。在此,我们回顾了近期(2020 - 2023年)利用基因组挖掘和合成生物学解决天然产物生产中面临的挑战(如种类少、效率低和产量低)的实例。此外,还讨论了合成生物学新兴的高效工具、设计原则和构建策略及其在天然产物合成中的应用前景。

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