Kim Sunghwan, Zhang Jian, Cheng Tiejun, Li Qingliang, Bolton Evan E
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, 20894, USA.
Anal Bioanal Chem. 2025 Feb;417(5):865-878. doi: 10.1007/s00216-024-05459-7. Epub 2024 Aug 12.
Studying glycans and their functions in the body aids in the understanding of disease mechanisms and developing new treatments. This necessitates resources that provide comprehensive glycan data integrated with relevant information from other scientific fields such as genomics, genetics, proteomics, metabolomics, and chemistry. The present paper describes two resources at the U.S. National Center for Biotechnology Information (NCBI), the NCBI Glycans and PubChem, which provide glycan-related information useful for the glycoscience research community. The NCBI Glycans ( https://www.ncbi.nlm.nih.gov/glycans/ ) is a dedicated website for glycobiology data content at NCBI and provides quick access to glycan-related information scattered across multiple NCBI databases as well as other information resources external to NCBI. Importantly, the NCBI Glycans hosts the official web page for the symbol nomenclature for glycans (SNFG), which is the standard graphical representation of glycan structures recommended for scientific publication. On the other hand, PubChem ( https://pubchem.ncbi.nlm.nih.gov ) is a research-focused, large-scale public chemical database, containing a substantial number of glycan-containing records and is integrated with important glycoscience resources like GlyTouCan, GlyCosmos, and GlyGen. PubChem organizes glycan-related information within multiple data collections (i.e., Substance, Compound, Protein, Gene, Pathway, and Taxonomy) and provides various tools and services that allow users to access them both interactively through a web browser and programmatically through a REST-ful interface, including PUG-View. The NCBI Glycans and PubChem highlight glycan-related data and improve their accessibility, helping scientists exploit these data in their research.
研究聚糖及其在体内的功能有助于理解疾病机制并开发新的治疗方法。这需要能提供综合聚糖数据并整合来自基因组学、遗传学、蛋白质组学、代谢组学和化学等其他科学领域相关信息的资源。本文介绍了美国国家生物技术信息中心(NCBI)的两个资源,即NCBI聚糖数据库和PubChem,它们为糖科学研究界提供了有用的聚糖相关信息。NCBI聚糖数据库(https://www.ncbi.nlm.nih.gov/glycans/)是NCBI专门用于糖生物学数据内容的网站,可快速访问分散在多个NCBI数据库以及NCBI外部其他信息资源中的聚糖相关信息。重要的是,NCBI聚糖数据库托管着聚糖符号命名法(SNFG)的官方网页,这是推荐用于科学出版物的聚糖结构的标准图形表示。另一方面,PubChem(https://pubchem.ncbi.nlm.nih.gov)是一个以研究为重点的大规模公共化学数据库,包含大量含聚糖的记录,并与GlyTouCan、GlyCosmos和GlyGen等重要的糖科学资源整合在一起。PubChem在多个数据集合(即物质、化合物、蛋白质、基因、途径和分类法)中整理聚糖相关信息,并提供各种工具和服务,允许用户通过网络浏览器以交互方式访问这些信息,也可以通过RESTful接口以编程方式访问,包括PUG-View。NCBI聚糖数据库和PubChem突出显示了聚糖相关数据并提高了其可访问性,有助于科学家在研究中利用这些数据。