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顺铂耐药性肺鳞状细胞癌患者预后基因特征的鉴定

Identification of a prognostic gene signature in patients with cisplatin resistant squamous cell lung cancer.

作者信息

Mu Yi, Dong Yinan, Zheng Mingyang, Barr Martin P, Roviello Giandomenico, Hu Zhihuang, Liu Jia

机构信息

Radiation Oncology Department of Breast Cancer, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, China.

Department of Thoracic Surgery, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, China.

出版信息

J Thorac Dis. 2024 Jul 30;16(7):4567-4583. doi: 10.21037/jtd-24-827. Epub 2024 Jul 26.


DOI:10.21037/jtd-24-827
PMID:39144297
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11320240/
Abstract

BACKGROUND: In the absence of targeted mutations and immune checkpoints, platinum-based chemotherapy remains a gold standard agent in the treatment of patients with lung squamous cell carcinoma (LUSC). However, cisplatin resistance greatly limits its therapeutic efficacy and presents challenges in the treatment of lung cancer patients. Therefore, the potential clinical needs for this research focus on identifying novel molecular signatures to further elucidate the underlying mechanisms of cisplatin resistance in LUSC. A growing body of evidence indicates that alternative splicing (AS) events significantly influence the tumor progression and survival of patients with LUSC. However, there are few systematic analyses of AS reported in LUSC. This study aims to explore the role of messenger RNA (mRNA), microRNA (miRNA), and AS in predicting prognosis in patients with cisplatin-resistant LUSC and provide potential therapeutic targets and drugs. METHODS: Gene expression and miRNA expression, using RNA sequencing (RNA-seq), and SpliceSeq data were downloaded from The Cancer Genome Atlas (TCGA) database. The least absolute shrinkage and selection operator (LASSO) Cox regression analysis were used to construct predictive models. Kaplan-Meier survival analyses were used to evaluate patients' prognosis. Single-sample gene set enrichment analysis (ssGSEA) conducted via the R package "GSEAbase" was used to evaluate the immune-related characteristics. Immunohistochemistry was used to examine protein expression. The Connectivity Map (CMap) database was used to screen for potential drugs. The 3-(4,5)-dimethylthiahiazo (-z-y1)-3,5-di-phenytetrazoliumromide (MTT) assay was used to determine and calculate the half-maximal inhibitory concentration (IC) of the drugs, sulforaphane and parthenolide. RESULTS: In this study, bioinformatics were used to identify mRNAs, miRNAs, and AS events related to response to cisplatin and to establish an integrated prognostic signature for 70 patients with LUSC and cisplatin resistance. The prognostic signature served as an independent prognostic factor with high accuracy [hazard ratio (HR) =2.346, 95% confidence interval (CI): 1.568-3.510; P<0.001], yielding an area under the curve (AUC) of 0.825, 0.829, and 0.877 for 1-, 3-, and 5-year survival, respectively. It also demonstrated high predictive performance in this cohort of patients with LUSC, with an AUC of 0.734, 0.767, and 0.776 for 1-, 3-, and 5-year survival, respectively. This integrated signature was also found to be an independent indicator among conventional clinical features (HR =2.288, 95% CI: 1.547-3.383; P<0.001). In addition, we analyzed the correlation of the signature with immune infiltration and identified several small-molecule drugs that had the potential to improve the survival of patients with LUSC. CONCLUSIONS: This study provides a framework for the mRNA-, miRNA-, and AS-based evaluation of cisplatin response and several potential therapeutic drugs for targeting cisplatin resistance in LUSC. These findings may serve as a theoretical basis for the clinical alleviation of cisplatin resistance and thus help to improve treatment responses to chemotherapy in patients with LUSC.

摘要

背景:在缺乏靶向突变和免疫检查点的情况下,铂类化疗仍然是治疗肺鳞状细胞癌(LUSC)患者的金标准药物。然而,顺铂耐药性极大地限制了其治疗效果,并给肺癌患者的治疗带来挑战。因此,本研究的潜在临床需求集中在识别新的分子特征,以进一步阐明LUSC中顺铂耐药的潜在机制。越来越多的证据表明,可变剪接(AS)事件显著影响LUSC患者的肿瘤进展和生存。然而,LUSC中关于AS的系统分析报道较少。本研究旨在探讨信使核糖核酸(mRNA)、微小核糖核酸(miRNA)和AS在预测顺铂耐药LUSC患者预后中的作用,并提供潜在的治疗靶点和药物。 方法:使用RNA测序(RNA-seq)技术获取基因表达和miRNA表达数据,并从癌症基因组图谱(TCGA)数据库下载剪接序列(SpliceSeq)数据。采用最小绝对收缩和选择算子(LASSO)Cox回归分析构建预测模型。使用Kaplan-Meier生存分析评估患者的预后。通过R包“GSEAbase”进行单样本基因集富集分析(ssGSEA),以评估免疫相关特征。采用免疫组织化学法检测蛋白表达。利用连通性图谱(CMap)数据库筛选潜在药物。使用3-(4,5)-二甲基噻唑-2,5-二苯基四氮唑溴盐(MTT)法测定并计算药物萝卜硫素和小白菊内酯的半数抑制浓度(IC)。 结果:在本研究中,利用生物信息学方法识别与顺铂反应相关的mRNA、miRNA和AS事件,并为70例LUSC和顺铂耐药患者建立了综合预后特征。该预后特征作为一个独立的预后因素,具有较高的准确性[风险比(HR)=2.346,95%置信区间(CI):1.568-3.510;P<0.001],1年、3年和5年生存率的曲线下面积(AUC)分别为0.825、0.829和0.877。在该LUSC患者队列中,其预测性能也较高,1年、3年和5年生存率的AUC分别为0.734、0.767和0.776。该综合特征在传统临床特征中也是一个独立指标(HR =2.288,95%CI:1.547-3.383;P<0.001)。此外,我们分析了该特征与免疫浸润的相关性,并确定了几种有可能提高LUSC患者生存率的小分子药物。 结论:本研究为基于mRNA、miRNA和AS评估顺铂反应提供了一个框架,并为靶向LUSC中的顺铂耐药性提供了几种潜在的治疗药物。这些发现可能为临床缓解顺铂耐药性提供理论依据,从而有助于改善LUSC患者对化疗的治疗反应。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe3d/11320240/185528cf4996/jtd-16-07-4567-f10.jpg
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引用本文的文献

[1]
HMGB1-BoxA gene therapy in reversing cisplatin resistance in non-small cell lung cancer.

PLoS One. 2025-6-25

[2]
Exploring miRNA profile associated with cisplatin resistance in ovarian cancer cells.

Biochem Biophys Rep. 2024-12-26

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Screening of miRNAs as prognostic biomarkers and their associated hub targets across Hepatocellular carcinoma using survival-based bioinformatics approach.

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Cell Rep. 2023-11-28

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