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基于聚类策略的角质酶 Est1 的进化及其在商业 PET 瓶降解中的应用。

The evolution of cutinase Est1 based on the clustering strategy and its application for commercial PET bottles degradation.

机构信息

National Energy R&D Center for Biorefinery, Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.

National Energy R&D Center for Biorefinery, Beijing Key Laboratory of Bioprocess, College of Life Science and Technology, Beijing University of Chemical Technology, Beijing, 100029, China.

出版信息

J Environ Manage. 2024 Sep;368:122217. doi: 10.1016/j.jenvman.2024.122217. Epub 2024 Aug 14.

DOI:10.1016/j.jenvman.2024.122217
PMID:39146645
Abstract

The rapid increase in global plastic consumption, especially the worldwide use of polyethylene terephthalate (PET), has caused serious pollution problems. Due to the low recycling rate of PET, a substantial amount of waste accumulates in the environment, which prompts a growing focus on enzymatic degradation for its efficiency and environmentally friendliness. This study systematically designed and modified a cutinase, Est1 from Thermobifida alba AHK119, known for its potential of plastic-degradation at high temperatures. Additionally, the introduction of clustering algorithms provided the ability to understand and modify biomolecules, to accelerate the process of finding the optimal mutations. K-means was further proceeded based on the positive mutations. After comprehensive screening for thermostability and activity mutation sites, the dominant mutation Est1_5M (Est1 with the mutations of N213M, T215P, S115P, Q93A, and L91W) exhibited satisfying degradation ability for commercial PET bottles. The results showed that Est1_5M achieved a degradation rate of 90.84% in 72 h, 65-fold higher than the wild type. This study offers reliable theoretical and practical support for the development of efficient PET-degrading enzymes, providing a reference for plastic pollution management.

摘要

全球塑料消费量的迅速增长,特别是全球范围内对聚对苯二甲酸乙二醇酯(PET)的使用,造成了严重的污染问题。由于 PET 的回收利用率较低,大量的废物在环境中积累,这促使人们越来越关注其高效、环保的酶降解方法。本研究系统地设计和修饰了一种来自嗜热真菌白腐菌 AHK119 的角质酶 Est1,该酶因其在高温下具有塑料降解潜力而备受关注。此外,聚类算法的引入提供了理解和修饰生物分子的能力,加速了寻找最佳突变的过程。在此基础上,进一步采用 K-means 算法对阳性突变进行了分析。经过对热稳定性和活性突变位点的综合筛选,发现具有 N213M、T215P、S115P、Q93A 和 L91W 突变的 Est1_5M(Est1 突变体)对商用 PET 瓶表现出令人满意的降解能力。结果表明,Est1_5M 在 72 小时内的降解率达到 90.84%,比野生型提高了 65 倍。本研究为高效 PET 降解酶的开发提供了可靠的理论和实践支持,为塑料污染治理提供了参考。

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