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RLSynC:用于连接子完成的离线-在线强化学习。

RLSynC: Offline-Online Reinforcement Learning for Synthon Completion.

机构信息

Department of Computer Science and Engineering, College of Engineering, The Ohio State University, Columbus, Ohio 43210, United States.

Division of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, The Ohio State University, Columbus, Ohio 43210, United States.

出版信息

J Chem Inf Model. 2024 Sep 9;64(17):6723-6735. doi: 10.1021/acs.jcim.4c00554. Epub 2024 Aug 18.

Abstract

Retrosynthesis is the process of determining the set of reactant molecules that can react to form a desired product. Semitemplate-based retrosynthesis methods, which imitate the reverse logic of synthesis reactions, first predict the reaction centers in the products and then complete the resulting synthons back into reactants. We develop a new offline-online reinforcement learning method RLSynC for synthon completion in semitemplate-based methods. RLSynC assigns one agent to each synthon, all of which complete the synthons by conducting actions step by step in a synchronized fashion. RLSynC learns the policy from both offline training episodes and online interactions, which allows RLSynC to explore new reaction spaces. RLSynC uses a standalone forward synthesis model to evaluate the likelihood of the predicted reactants in synthesizing a product and thus guides the action search. Our results demonstrate that RLSynC can outperform state-of-the-art synthon completion methods with improvements as high as 14.9%, highlighting its potential in synthesis planning.

摘要

逆合成是确定可以反应生成目标产物的反应物分子集合的过程。基于半模板的逆合成方法模仿合成反应的逆向逻辑,首先预测产物中的反应中心,然后将生成的连接子重新组合成反应物。我们开发了一种新的基于离线-在线强化学习的方法 RLSynC 来完成半模板方法中的连接子。RLSynC 为每个连接子分配一个代理,所有代理通过同步地逐步执行操作来完成连接子。RLSynC 从离线训练片段和在线交互中学习策略,这允许 RLSynC 探索新的反应空间。RLSynC 使用独立的正向合成模型来评估预测反应物合成产物的可能性,从而指导动作搜索。我们的结果表明,RLSynC 可以比最先进的连接子完成方法表现更好,改进高达 14.9%,突出了其在合成规划中的潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1c16/11388466/b24ce6feddca/ci4c00554_0001.jpg

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