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HPF1 对于细胞去除 DNA 单链断裂的非必需性。

Dispensability of HPF1 for cellular removal of DNA single-strand breaks.

机构信息

Laboratory of Genome Dynamics, Institute of Molecular Genetics of the Czech Academy of Sciences, Prague 4142 20, Czech Republic.

Faculty of Science, Charles University in Prague, Prague 2128 43, Czech Republic.

出版信息

Nucleic Acids Res. 2024 Oct 14;52(18):10986-10998. doi: 10.1093/nar/gkae708.


DOI:10.1093/nar/gkae708
PMID:39162207
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11472159/
Abstract

In response to DNA damage, the histone PARylation factor 1 (HPF1) regulates PARP1/2 activity, facilitating serine ADP-ribosylation of chromatin-associated factors. While PARP1/2 are known for their role in DNA single-strand break repair (SSBR), the significance of HPF1 in this process remains unclear. Here, we investigated the impact of HPF1 deficiency on cellular survival and SSBR following exposure to various genotoxins. We found that HPF1 loss did not generally increase cellular sensitivity to agents that typically induce DNA single-strand breaks (SSBs) repaired by PARP1. SSBR kinetics in HPF1-deficient cells were largely unaffected, though its absence partially influenced the accumulation of SSB intermediates after exposure to specific genotoxins in certain cell lines, likely due to altered ADP-ribosylation of chromatin. Despite reduced serine mono-ADP-ribosylation, HPF1-deficient cells maintained robust poly-ADP-ribosylation at SSB sites, possibly reflecting PARP1 auto-poly-ADP-ribosylation at non-serine residues. Notably, poly-ADP-ribose chains were sufficient to recruit the DNA repair factor XRCC1, which may explain the relatively normal SSBR capacity in HPF1-deficient cells. These findings suggest that HPF1 and histone serine ADP-ribosylation are largely dispensable for PARP1-dependent SSBR in response to genotoxic stress, highlighting the complexity of mechanisms that maintain genomic stability and chromatin remodeling.

摘要

针对 DNA 损伤,组蛋白 PAR 化因子 1(HPF1)调节 PARP1/2 的活性,促进染色质相关因子的丝氨酸 ADP-核糖基化。虽然 PARP1/2 以其在 DNA 单链断裂修复(SSBR)中的作用而闻名,但 HPF1 在该过程中的意义尚不清楚。在这里,我们研究了 HPF1 缺失对各种遗传毒物暴露后细胞存活和 SSBR 的影响。我们发现,HPF1 缺失通常不会增加细胞对通常诱导由 PARP1 修复的 DNA 单链断裂(SSBs)的药物的敏感性。HPF1 缺陷细胞的 SSBR 动力学基本不受影响,尽管其缺失在某些细胞系中暴露于特定遗传毒物后会部分影响 SSB 中间产物的积累,这可能是由于染色质 ADP-核糖基化的改变。尽管丝氨酸单 ADP-核糖基化减少,但 HPF1 缺陷细胞仍能在 SSB 部位保持强大的聚 ADP-核糖基化,这可能反映了 PARP1 在非丝氨酸残基上的自身聚 ADP-核糖基化。值得注意的是,聚 ADP-核糖链足以募集 DNA 修复因子 XRCC1,这可以解释 HPF1 缺陷细胞相对正常的 SSBR 能力。这些发现表明,HPF1 和组蛋白丝氨酸 ADP-核糖基化在遗传毒物应激下 PARP1 依赖性 SSBR 中基本是可有可无的,突出了维持基因组稳定性和染色质重塑的机制的复杂性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/d102b7270ec5/gkae708fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/52de17ab48a8/gkae708figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/fe408c7b5ad0/gkae708fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/23b8eac14af8/gkae708fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/e6bc4ffb0782/gkae708fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/a64a00c15fbe/gkae708fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/d102b7270ec5/gkae708fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/52de17ab48a8/gkae708figgra1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/fe408c7b5ad0/gkae708fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/23b8eac14af8/gkae708fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/e6bc4ffb0782/gkae708fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/a64a00c15fbe/gkae708fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0555/11472159/d102b7270ec5/gkae708fig5.jpg

相似文献

[1]
Dispensability of HPF1 for cellular removal of DNA single-strand breaks.

Nucleic Acids Res. 2024-10-14

[2]
HPF1-dependent histone ADP-ribosylation triggers chromatin relaxation to promote the recruitment of repair factors at sites of DNA damage.

Nat Struct Mol Biol. 2023-5

[3]
The CSB chromatin remodeler regulates PARP1- and PARP2-mediated single-strand break repair at actively transcribed DNA regions.

Nucleic Acids Res. 2023-8-11

[4]
Dual function of HPF1 in the modulation of PARP1 and PARP2 activities.

Commun Biol. 2021-11-3

[5]
[Poly(ADP-Ribose) Polymerases 1 and 2: Classical Functions and Interaction with New Histone Poly(ADP-Ribosyl)ation Factor HPF1].

Mol Biol (Mosk). 2023

[6]
HPF1 dynamically controls the PARP1/2 balance between initiating and elongating ADP-ribose modifications.

Nat Commun. 2021-11-18

[7]
HPF1 remodels the active site of PARP1 to enable the serine ADP-ribosylation of histones.

Nat Commun. 2021-2-15

[8]
HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.

Nature. 2020-2-6

[9]
HPF1 and nucleosomes mediate a dramatic switch in activity of PARP1 from polymerase to hydrolase.

Elife. 2021-3-8

[10]
Serine ADP-Ribosylation Depends on HPF1.

Mol Cell. 2017-3-2

引用本文的文献

[1]
Deciphering the dark side of histone ADP-ribosylation: what structural features of damaged nucleosome regulate the activities of PARP1 and PARP2.

Nucleic Acids Res. 2025-9-5

[2]
FEN1 is critical for rapid single-strand break repair in G1 phase.

Nucleic Acids Res. 2025-7-19

[3]
Joining of DNA breaks- interplay between DNA ligases and poly (ADP-ribose) polymerases.

DNA Repair (Amst). 2025-5

[4]
Targeting DNA damage sensors for cancer therapy.

DNA Repair (Amst). 2025-5

[5]
HPF1 Regulates Pol β Efficiency in Nucleosomes via the Modulation of Total Poly(ADP-Ribose) Synthesis.

Int J Mol Sci. 2025-2-20

本文引用的文献

[1]
Unrepaired base excision repair intermediates in template DNA strands trigger replication fork collapse and PARP inhibitor sensitivity.

EMBO J. 2023-9-18

[2]
HPF1-dependent histone ADP-ribosylation triggers chromatin relaxation to promote the recruitment of repair factors at sites of DNA damage.

Nat Struct Mol Biol. 2023-5

[3]
DNA single-strand break repair and human genetic disease.

Trends Cell Biol. 2022-9

[4]
PARP inhibition impedes the maturation of nascent DNA strands during DNA replication.

Nat Struct Mol Biol. 2022-4

[5]
Serine ADP-ribosylation marks nucleosomes for ALC1-dependent chromatin remodeling.

Elife. 2021-12-7

[6]
Temporal and Site-Specific ADP-Ribosylation Dynamics upon Different Genotoxic Stresses.

Cells. 2021-10-28

[7]
The regulatory landscape of the human HPF1- and ARH3-dependent ADP-ribosylome.

Nat Commun. 2021-10-8

[8]
Structure and dynamics of the chromatin remodeler ALC1 bound to a PARylated nucleosome.

Elife. 2021-9-6

[9]
Serine-linked PARP1 auto-modification controls PARP inhibitor response.

Nat Commun. 2021-7-1

[10]
Unrestrained poly-ADP-ribosylation provides insights into chromatin regulation and human disease.

Mol Cell. 2021-6-17

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