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本文引用的文献

1
Isolation and Annotation of Azira, a CT Cluster Phage That Infects Gordonia rubripertincta.感染红皮戈登氏菌的CT簇噬菌体阿齐拉的分离与注释
Microbiol Resour Announc. 2023 Jul 18;12(7):e0034723. doi: 10.1128/mra.00347-23. Epub 2023 Jun 22.
2
Bioinformatic characterization of endolysins and holin-like membrane proteins in the lysis cassette of phages that infect Gordonia rubripertincta.感染戈登氏红杆菌噬菌体裂解盒中内溶素和类似孔蛋白的生物信息学特征。
PLoS One. 2022 Nov 17;17(11):e0276603. doi: 10.1371/journal.pone.0276603. eCollection 2022.
3
PhaMMseqs: a new pipeline for constructing phage gene phamilies using MMseqs2.PhaMMseqs:使用 MMseqs2 构建噬菌体基因家族的新管道。
G3 (Bethesda). 2022 Nov 4;12(11). doi: 10.1093/g3journal/jkac233.
4
The application and research progress of bacteriophages in food safety.噬菌体在食品安全中的应用及研究进展。
J Appl Microbiol. 2022 Oct;133(4):2137-2147. doi: 10.1111/jam.15555. Epub 2022 Apr 11.
5
Application of Bacteriophages for Mycobacterial Infections, from Diagnosis to Treatment.噬菌体在分枝杆菌感染中的应用:从诊断到治疗
Microorganisms. 2021 Nov 16;9(11):2366. doi: 10.3390/microorganisms9112366.
6
Coevolution between bacterial CRISPR-Cas systems and their bacteriophages.细菌CRISPR-Cas系统与其噬菌体之间的共同进化。
Cell Host Microbe. 2021 May 12;29(5):715-725. doi: 10.1016/j.chom.2021.03.018.
7
Annotation of Bacteriophage Genome Sequences Using DNA Master: An Overview.使用DNA Master对噬菌体基因组序列进行注释:概述
Methods Mol Biol. 2018;1681:217-229. doi: 10.1007/978-1-4939-7343-9_16.
8
Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.完整噬菌体基因组的测序、组装与完成
Methods Mol Biol. 2018;1681:109-125. doi: 10.1007/978-1-4939-7343-9_9.
9
PhagesDB: the actinobacteriophage database.噬菌体数据库:放线菌噬菌体数据库。
Bioinformatics. 2017 Mar 1;33(5):784-786. doi: 10.1093/bioinformatics/btw711.
10
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides.用于膜蛋白拓扑结构和信号肽一致性预测的TOPCONS网络服务器。
Nucleic Acids Res. 2015 Jul 1;43(W1):W401-7. doi: 10.1093/nar/gkv485. Epub 2015 May 12.

Xenia2的基因组序列,一种感染……的双链病毒簇噬菌体 。(原文中“infects”后内容不完整)

Genome sequence of Xenia2 a DV cluster phage that infects .

作者信息

Agaiby Carol, Ahmed Maha, Argueta Aidan, Arrowood Kyle, Barrier Keelynn P, Church Meghan W, Connell Cheryl R, Dao Ken D, Dao Kathleen Huyen T, Davenport Makenzie R, Edmondson Megan D, Estabrook Makenzie I, Gondhi Santoshi, Gonzalez Patricia, Leduc Francine, Ma Trang, Mansoor Adam, Mansoor Sara, Mattley Lillian, Meyer Cyrus, Nguyen Loc, Niaz Emaan, Parker Jenna M, Ross Delaney C, Scott Devin M, Semryck Brianna, Takla Kyrillos, Tiramdas Aishwarya, Upputuru Sai Kaushik, Pollenz Richard S

机构信息

Department of Molecular Biosciences, University of South Florida, Tampa, Florida, USA.

出版信息

Microbiol Resour Announc. 2024 Sep 10;13(9):e0057824. doi: 10.1128/mra.00578-24. Epub 2024 Aug 20.

DOI:10.1128/mra.00578-24
PMID:39162485
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11385102/
Abstract

Xenia2 is a DV cluster actinobacteriophage that infects NRRL B-16540. The genome is 68,135bp, has a GC content of 57.9% and 98 predicted protein-coding genes, 33 of which have a predicted function. Xenia2 has a lysis cassette with an endolysin (lysin A) and four different holin-like transmembrane proteins.

摘要

Xenia2是一种感染NRRL B-16540的双链DNA(DV)簇放线菌噬菌体。其基因组为68,135碱基对,GC含量为57.9%,有98个预测的蛋白质编码基因,其中33个具有预测功能。Xenia2有一个包含内溶素(溶素A)和四种不同类孔蛋白样跨膜蛋白的裂解盒。