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使用基于状态预测信息瓶颈的增强采样模拟胶体系统中的结晶过程。

Simulating Crystallization in a Colloidal System Using State Predictive Information Bottleneck Based Enhanced Sampling.

作者信息

Meraz Vanessa J, Zou Ziyue, Tiwary Pratyush

机构信息

Institute for Physical Science and Technology, University of Maryland, College Park, Maryland 20742, United States.

Department of Chemistry and Biochemistry, University of Maryland, College Park, Maryland 20742, United States.

出版信息

J Phys Chem B. 2024 Aug 29;128(34):8207-8214. doi: 10.1021/acs.jpcb.4c02740. Epub 2024 Aug 20.

Abstract

We investigate crystal nucleation in supersaturated colloid suspensions using enhanced molecular dynamics simulations augmented with machine learning techniques. The simulations reveal that crystallization in the model colloidal system studied here, with particles interacting through a repulsive screened Coulomb Yukawa potential, proceeds from vapor to dense liquid droplet to crystalline phases across multiple high barriers. Employing a one-dimensional reaction coordinate derived from the State Predictive Information Bottleneck framework, our simulations capture back-and-forth phase transitions across multiple barriers effectively in biased metadynamics simulations. We obtain relative free energy differences between different phases and also quantify the roles of different molecular level features in driving the phase changes.

摘要

我们使用增强的分子动力学模拟并结合机器学习技术,研究了过饱和胶体悬浮液中的晶体成核现象。模拟结果表明,在此研究的模型胶体系统中,粒子通过排斥性屏蔽库仑-汤川势相互作用,结晶过程从气相经过多个高势垒转变为致密液滴,再转变为晶相。利用从状态预测信息瓶颈框架导出的一维反应坐标,我们的模拟在有偏的元动力学模拟中有效地捕捉了跨越多个势垒的来回相变。我们获得了不同相之间的相对自由能差,并量化了不同分子水平特征在驱动相变中的作用。

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