• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利：CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法，用中文像聊天一样搜索，搜遍4000万医学文献。AI智能推荐，让科研检索更轻松。

立即免费搜索

文件翻译

保留排版，准确专业，支持PDF/Word/PPT等文件格式，支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述，25分钟生成高质量综述，智能提取关键信息，辅助科研写作。

立即免费体验

中国红树林根际土壤真菌多样性和伪染色体基因组数据集。

Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China.

机构信息

BGI Research, Qingdao, 266555, China.

Qingdao Key Laboratory of Marine Genomics, and Qingdao-Europe Advanced Institute for Life Sciences, BGI Research, Qingdao, 266555, China.

出版信息

Sci Data. 2024 Aug 20;11(1):901. doi: 10.1038/s41597-024-03748-5.

DOI:10.1038/s41597-024-03748-5
PMID:39164251
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11336097/
Abstract

With climate change and anthropic influence on the coastal ecosystems, mangrove ecosystems are disappearing at an alarming rate. Accordingly, it becomes important to track, study, record and store the mangrove microbial community considering their ecological importance and potential for biotechnological applications. Here, we provide information on mangrove fungal community composition and diversity in mangrove ecosystems with different plant species and from various locations differing in relation to anthropic influences. We describe twelve newly assembled genomes, including four chromosomal-level genomes of fungal isolates from the mangrove ecosystems coupled with functional annotations. We envisage that these data will be of value for future studies including comparative genome analysis and large-scale temporal and/or spatial research to elucidate the potential mechanisms by which mangrove fungal communities assemble and evolve. We further anticipate that the genomes represent valuable resources for bioprospecting related to industrial or clinical uses.

摘要

随着气候变化和人类活动对沿海生态系统的影响，红树林生态系统正以惊人的速度消失。因此，考虑到其生态重要性和生物技术应用的潜力，对红树林微生物群落进行跟踪、研究、记录和存储变得尤为重要。在这里，我们提供了有关不同植物物种和不同人类活动影响地区红树林生态系统中红树林真菌群落组成和多样性的信息。我们描述了十二个新组装的基因组，包括四个来自红树林生态系统的真菌分离物的染色体水平基因组，以及功能注释。我们设想，这些数据将对未来的研究具有价值，包括比较基因组分析和大规模的时间和/或空间研究，以阐明红树林真菌群落组装和进化的潜在机制。我们进一步预计，这些基因组是与工业或临床用途相关的生物勘探的有价值资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/b20e9f299c0c/41597_2024_3748_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/c97a51239e49/41597_2024_3748_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/8db3f4be5f84/41597_2024_3748_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/f2bfb6b5ca98/41597_2024_3748_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/69c6becc3449/41597_2024_3748_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/b20e9f299c0c/41597_2024_3748_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/c97a51239e49/41597_2024_3748_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/8db3f4be5f84/41597_2024_3748_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/f2bfb6b5ca98/41597_2024_3748_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/69c6becc3449/41597_2024_3748_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/b20e9f299c0c/41597_2024_3748_Fig5_HTML.jpg

相似文献

1
Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China.中国红树林根际土壤真菌多样性和伪染色体基因组数据集。
Sci Data. 2024 Aug 20;11(1):901. doi: 10.1038/s41597-024-03748-5.
2
Diversity, function and assembly of mangrove root-associated microbial communities at a continuous fine-scale.连续细微尺度下红树林根系相关微生物群落的多样性、功能及组装。
NPJ Biofilms Microbiomes. 2020 Nov 12;6(1):52. doi: 10.1038/s41522-020-00164-6.
3
Fungal community assemblage of different soil compartments in mangrove ecosystem.红树林生态系统不同土壤层中的真菌群落组合。
Sci Rep. 2017 Aug 17;7(1):8560. doi: 10.1038/s41598-017-09281-3.
4
High-Level Diversity of Basal Fungal Lineages and the Control of Fungal Community Assembly by Stochastic Processes in Mangrove Sediments.红树林沉积物中基真菌类群的高丰度多样性和真菌群落组装的随机过程控制。
Appl Environ Microbiol. 2021 Aug 11;87(17):e0092821. doi: 10.1128/AEM.00928-21.
5
Mangrove wetland recovery enhances soil carbon sequestration capacity of soil aggregates and microbial network stability in southeastern China.红树林湿地恢复提高了中国东南部土壤团聚体的土壤碳固存能力和微生物网络稳定性。
Sci Total Environ. 2024 Nov 15;951:175586. doi: 10.1016/j.scitotenv.2024.175586. Epub 2024 Aug 21.
6
Microbial community composition and co-occurrence network analysis of the rhizosphere soil of the main constructive tree species in Helan Mountain of Northwest China.中国西北贺兰山主要造林树种根际土壤微生物群落组成及共生网络分析。
Sci Rep. 2024 Oct 19;14(1):24557. doi: 10.1038/s41598-024-76195-2.
7
Variations of soil bacterial diversity and metabolic function with tidal flat elevation gradient in an artificial mangrove wetland.人工红树林湿地中滩涂高程梯度对土壤细菌多样性和代谢功能的影响。
Sci Total Environ. 2020 May 20;718:137385. doi: 10.1016/j.scitotenv.2020.137385. Epub 2020 Feb 19.
8
Phylogenetic analysis and antifouling potentials of culturable fungi in mangrove sediments from Techeng Isle, China.中国特呈岛红树林沉积物可培养真菌的系统发育分析及抗污潜力。
World J Microbiol Biotechnol. 2018 Jun 9;34(7):90. doi: 10.1007/s11274-018-2470-3.
9
Mangrove afforestation as an ecological control of invasive affects rhizosphere soil physicochemical properties and bacterial community in a subtropical tidal estuarine wetland.红树林造林作为生态控制入侵种对亚热带潮汐河口湿地根际土壤理化性质和细菌群落的影响。
PeerJ. 2024 Oct 14;12:e18291. doi: 10.7717/peerj.18291. eCollection 2024.
10
Species pool and soil properties in mangrove habitats influence the species-immigration process of diazotrophic communities across southern China.物种库和红树林生境中的土壤特性影响了中国南方固氮社区的物种传入过程。
mSystems. 2024 Aug 20;9(8):e0030724. doi: 10.1128/msystems.00307-24. Epub 2024 Jul 9.

引用本文的文献

1
Taxonomic composition and functional potentials of gastrointestinal microbiota in 12 wild-stranded cetaceans.12头野生搁浅鲸类胃肠道微生物群的分类组成和功能潜力
Front Microbiol. 2024 Aug 29;15:1394745. doi: 10.3389/fmicb.2024.1394745. eCollection 2024.

本文引用的文献

1
JCVI: A versatile toolkit for comparative genomics analysis.JCVI：用于比较基因组学分析的多功能工具包。
Imeta. 2024 Jun 12;3(4):e211. doi: 10.1002/imt2.211. eCollection 2024 Aug.
2
EasyAmplicon: An easy-to-use, open-source, reproducible, and community-based pipeline for amplicon data analysis in microbiome research.EasyAmplicon：一种易于使用、开源、可重复且基于社区的流程，用于微生物组研究中的扩增子数据分析。
Imeta. 2023 Jan 27;2(1):e83. doi: 10.1002/imt2.83. eCollection 2023 Feb.
3
MetaTrass: A high-quality metagenome assembler of the human gut microbiome by cobarcoding sequencing reads.
MetaTrass：一种通过共条形码测序读数对人类肠道微生物组进行高质量宏基因组组装的工具。
Imeta. 2022 Aug 15;1(4):e46. doi: 10.1002/imt2.46. eCollection 2022 Dec.
4
Dynamics of rhizosphere microbial structure and function associated with the biennial bearing of moso bamboo.与毛竹两年生结实相关的根际微生物结构和功能的动态变化。
J Environ Manage. 2024 Feb;351:119977. doi: 10.1016/j.jenvman.2023.119977. Epub 2023 Dec 30.
5
Application of culturomics in fungal isolation from mangrove sediments.文化组学在红树林沉积物真菌分离中的应用。
Microbiome. 2023 Dec 11;11(1):272. doi: 10.1186/s40168-023-01708-6.
6
Draft Genomes and Comparative Analysis of Seven Mangrove Rhizosphere-Associated Fungi Isolated From and .从[具体地点1]和[具体地点2]分离出的七种红树林根际相关真菌的基因组草图及比较分析
Front Fungal Biol. 2021 Apr 14;2:626904. doi: 10.3389/ffunb.2021.626904. eCollection 2021.
7
Enzymatic degradation and metabolic pathway of phenanthrene by manglicolous filamentous fungus Trichoderma sp. CNSC-2.黄麻内生丝状真菌 Trichoderma sp. CNSC-2 对菲的酶促降解及代谢途径。
Microbiol Res. 2023 Nov;276:127483. doi: 10.1016/j.micres.2023.127483. Epub 2023 Aug 29.
8
An independent evaluation in a CRC patient cohort of microbiome 16S rRNA sequence analysis methods: OTU clustering, DADA2, and Deblur.在结直肠癌患者队列中对微生物组16S rRNA序列分析方法进行的独立评估：OTU聚类、DADA2和Deblur。
Front Microbiol. 2023 Jul 25;14:1178744. doi: 10.3389/fmicb.2023.1178744. eCollection 2023.
9
SMARTdenovo: a assembler using long noisy reads.SMARTdenovo：一种使用长的有噪声读段的序列拼接软件。
GigaByte. 2021 Mar 8;2021:gigabyte15. doi: 10.46471/gigabyte.15. eCollection 2021.
10
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.利用 RagTag 进行自动化组装支架，为高通量基因组编辑提升了一个新的番茄系统。
Genome Biol. 2022 Dec 15;23(1):258. doi: 10.1186/s13059-022-02823-7.