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中国红树林根际土壤真菌多样性和伪染色体基因组数据集。

Datasets of fungal diversity and pseudo-chromosomal genomes of mangrove rhizosphere soil in China.

机构信息

BGI Research, Qingdao, 266555, China.

Qingdao Key Laboratory of Marine Genomics, and Qingdao-Europe Advanced Institute for Life Sciences, BGI Research, Qingdao, 266555, China.

出版信息

Sci Data. 2024 Aug 20;11(1):901. doi: 10.1038/s41597-024-03748-5.

Abstract

With climate change and anthropic influence on the coastal ecosystems, mangrove ecosystems are disappearing at an alarming rate. Accordingly, it becomes important to track, study, record and store the mangrove microbial community considering their ecological importance and potential for biotechnological applications. Here, we provide information on mangrove fungal community composition and diversity in mangrove ecosystems with different plant species and from various locations differing in relation to anthropic influences. We describe twelve newly assembled genomes, including four chromosomal-level genomes of fungal isolates from the mangrove ecosystems coupled with functional annotations. We envisage that these data will be of value for future studies including comparative genome analysis and large-scale temporal and/or spatial research to elucidate the potential mechanisms by which mangrove fungal communities assemble and evolve. We further anticipate that the genomes represent valuable resources for bioprospecting related to industrial or clinical uses.

摘要

随着气候变化和人类活动对沿海生态系统的影响,红树林生态系统正以惊人的速度消失。因此,考虑到其生态重要性和生物技术应用的潜力,对红树林微生物群落进行跟踪、研究、记录和存储变得尤为重要。在这里,我们提供了有关不同植物物种和不同人类活动影响地区红树林生态系统中红树林真菌群落组成和多样性的信息。我们描述了十二个新组装的基因组,包括四个来自红树林生态系统的真菌分离物的染色体水平基因组,以及功能注释。我们设想,这些数据将对未来的研究具有价值,包括比较基因组分析和大规模的时间和/或空间研究,以阐明红树林真菌群落组装和进化的潜在机制。我们进一步预计,这些基因组是与工业或临床用途相关的生物勘探的有价值资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81fe/11336097/c97a51239e49/41597_2024_3748_Fig1_HTML.jpg

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