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一种用于医学图像分割的高效分割一切模型。

An efficient segment anything model for the segmentation of medical images.

机构信息

School of Information Engineering, Huzhou University, Huzhou, 313000, China.

College of Information Science and Technology, Zhejiang Shuren University, Hangzhou, 310015, China.

出版信息

Sci Rep. 2024 Aug 21;14(1):19425. doi: 10.1038/s41598-024-70288-8.

DOI:10.1038/s41598-024-70288-8
PMID:39169054
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11339323/
Abstract

This paper introduces the efficient medical-images-aimed segment anything model (EMedSAM), addressing the high computational demands and limited adaptability of using SAM for medical image segmentation tasks. We present a novel, compact image encoder, DD-TinyViT, designed to enhance segmentation efficiency through an innovative parameter tuning method called med-adapter. The lightweight DD-TinyViT encoder is derived from the well-known ViT-H using a decoupled distillation approach.The segmentation and recognition capabilities of EMedSAM for specific structures are improved by med-adapter, which dynamically adjusts the model parameters specifically for medical imaging. We conducted extensive testing on EMedSAM using the public FLARE 2022 dataset and datasets from the First Hospital of Zhejiang University School of Medicine. The results demonstrate that our model outperforms existing state-of-the-art models in both multi-organ and lung segmentation tasks.

摘要

本文介绍了高效的医学图像目标分割模型(EMedSAM),该模型针对使用 SAM 进行医学图像分割任务时的高计算需求和有限的适应性问题进行了优化。我们提出了一种新颖的紧凑型图像编码器 DD-TinyViT,通过一种称为 med-adapter 的创新参数调整方法来提高分割效率。该轻量级的 DD-TinyViT 编码器是基于著名的 ViT-H 使用解耦蒸馏方法得到的。med-adapter 改善了 EMedSAM 对特定结构的分割和识别能力,它可以针对医学成像动态调整模型参数。我们使用公共 FLARE 2022 数据集和浙江大学医学院第一附属医院的数据集对 EMedSAM 进行了广泛的测试。结果表明,我们的模型在多器官和肺部分割任务中均优于现有的最先进模型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/0dd5f58d90ed/41598_2024_70288_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/ae62f44652e3/41598_2024_70288_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/66f7338524d0/41598_2024_70288_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/ee65f87aa15a/41598_2024_70288_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/0dd5f58d90ed/41598_2024_70288_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/ae62f44652e3/41598_2024_70288_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/66f7338524d0/41598_2024_70288_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/ee65f87aa15a/41598_2024_70288_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/90f0/11339323/0dd5f58d90ed/41598_2024_70288_Fig4_HTML.jpg

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本文引用的文献

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Segment anything in medical images.在医学图像中分割任何内容。
Nat Commun. 2024 Jan 22;15(1):654. doi: 10.1038/s41467-024-44824-z.
2
Segment anything model for medical image analysis: An experimental study.用于医学图像分析的分割模型:一项实验研究。
Med Image Anal. 2023 Oct;89:102918. doi: 10.1016/j.media.2023.102918. Epub 2023 Aug 2.
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Generalist Vision Foundation Models for Medical Imaging: A Case Study of Segment Anything Model on Zero-Shot Medical Segmentation.用于医学成像的通用视觉基础模型:以零样本医学分割中的分割一切模型为例
Diagnostics (Basel). 2023 Jun 2;13(11):1947. doi: 10.3390/diagnostics13111947.
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Anam-Net: Anamorphic Depth Embedding-Based Lightweight CNN for Segmentation of Anomalies in COVID-19 Chest CT Images.Anam-Net:基于变形深度嵌入的轻量级 COVID-19 胸部 CT 图像异常分割 CNN
IEEE Trans Neural Netw Learn Syst. 2021 Mar;32(3):932-946. doi: 10.1109/TNNLS.2021.3054746. Epub 2021 Mar 1.
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nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation.nnU-Net:一种基于深度学习的生物医学图像分割的自配置方法。
Nat Methods. 2021 Feb;18(2):203-211. doi: 10.1038/s41592-020-01008-z. Epub 2020 Dec 7.
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CT male pelvic organ segmentation using fully convolutional networks with boundary sensitive representation.使用具有边界敏感表示的全卷积网络进行男性盆腔器官的CT分割
Med Image Anal. 2019 May;54:168-178. doi: 10.1016/j.media.2019.03.003. Epub 2019 Mar 21.
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DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation.DeepIGeoS:用于医学图像分割的深度交互式测地线框架。
IEEE Trans Pattern Anal Mach Intell. 2019 Jul;41(7):1559-1572. doi: 10.1109/TPAMI.2018.2840695. Epub 2018 Jun 1.
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Weighted Level Set Evolution Based on Local Edge Features for Medical Image Segmentation.基于局部边缘特征的加权水平集演化用于医学图像分割
IEEE Trans Image Process. 2017 Apr;26(4):1979-1991. doi: 10.1109/TIP.2017.2666042. Epub 2017 Feb 8.
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Medical image segmentation on GPUs--a comprehensive review.基于 GPU 的医学影像分割技术综述。
Med Image Anal. 2015 Feb;20(1):1-18. doi: 10.1016/j.media.2014.10.012. Epub 2014 Dec 2.
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A review of segmentation methods in short axis cardiac MR images.短轴心脏磁共振图像分割方法综述。
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