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转录组分析揭示2型糖尿病与复发性良性阵发性位置性眩晕之间的串扰基因。

Transcriptomic analysis reveals cross-talk genes between type 2 diabetes and recurrent benign paroxysmal positional vertigo.

作者信息

Hui Jing, Zi Dingjing, Liang LePing, Ren Xiaoyong

机构信息

Department of Neurology, The Second Afliated Hospital of Xi'an Medical College, China.

Department of Otolaryngology, The Second Afliated Hospital of Air Force Medical University, China.

出版信息

Heliyon. 2024 Jul 29;10(15):e35209. doi: 10.1016/j.heliyon.2024.e35209. eCollection 2024 Aug 15.

Abstract

BACKGROUND

Benign paroxysmal positional vertigo (BPPV) is a common neurological disorder with a high recurrence rate. Type 2 diabetes mellitus (T2DM) is recognized as a risk factor for BPPV recurrence. However, the genomic association between T2DM and BPPV recurrence remains understudied.

METHODS

Differential gene expression analysis and weighted gene co-expression network analysis were used to identify shared genes between BPPV recurrence and T2DM. The MCC algorithm was employed to select hub genes from the protein-protein interaction network of the shared genes. The predictive efficacy of hub genes for BPPV recurrence and T2DM was assessed using ROC curve analysis. Genemania database was used to identify downstream targets of hub genes. The immune infiltration landscape of BPPV and T2DM was characterized using the CIBERSORT algorithm. Correlation analysis was performed to explore the relationship between hub genes and immune cells. The expression levels of hub genes in patient blood samples were validated using qPCR.

RESULTS

Thirteen shared genes were identified and a protein-protein interaction network was constructed for BPPV recurrence and T2DM. Subsequently, four hub genes were selected, and their expression levels effectively predicted the occurrence of BPPV recurrence and T2DM. These hub genes were highly correlated with immune cell infiltration, indicating a common mechanism underlying recurrent BPPV and T2DM. Finally, the upregulation of hub genes in patients with T2DM comorbid with BPPV recurrence was confirmed in blood samples. These hub genes may serve as predictive biomarkers for assessing the recurrence rate in BPPV patients with comorbid T2DM.

CONCLUSION

We proposed shared gene characteristics between BPPV recurrence and T2DM, revealing an immune-mediated inflammatory regulation as a common pathway and identifying four immune-related biomarkers and potential therapeutic targets for T2DM comorbid with recurrent BPPV.

摘要

背景

良性阵发性位置性眩晕(BPPV)是一种常见的神经系统疾病,复发率高。2型糖尿病(T2DM)被认为是BPPV复发的一个危险因素。然而,T2DM与BPPV复发之间的基因组关联仍未得到充分研究。

方法

采用差异基因表达分析和加权基因共表达网络分析来鉴定BPPV复发与T2DM之间的共享基因。运用MCC算法从共享基因的蛋白质-蛋白质相互作用网络中选择枢纽基因。使用ROC曲线分析评估枢纽基因对BPPV复发和T2DM的预测效能。利用Genemania数据库鉴定枢纽基因的下游靶点。使用CIBERSORT算法描绘BPPV和T2DM的免疫浸润图谱。进行相关性分析以探索枢纽基因与免疫细胞之间的关系。使用qPCR验证患者血液样本中枢纽基因的表达水平。

结果

鉴定出13个共享基因,并构建了BPPV复发与T2DM的蛋白质-蛋白质相互作用网络。随后,选择了4个枢纽基因,它们的表达水平有效地预测了BPPV复发和T2DM的发生。这些枢纽基因与免疫细胞浸润高度相关,表明复发性BPPV和T2DM存在共同机制。最后,在血液样本中证实了合并BPPV复发的T2DM患者中枢纽基因的上调。这些枢纽基因可能作为评估合并T2DM的BPPV患者复发率的预测生物标志物。

结论

我们提出了BPPV复发与T2DM之间的共享基因特征,揭示了免疫介导的炎症调节作为一条共同途径,并鉴定出4个免疫相关生物标志物以及合并复发性BPPV的T2DM的潜在治疗靶点。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/34c5/11336458/df85b31ad273/gr1.jpg

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