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研究报告:深度学习方法从全身 X 射线图像中分割鸡的龙骨。

Research Note: A deep learning method segments chicken keel bones from whole-body X-ray images.

机构信息

Department of Animal Biosciences, Swedish University of Agricultural Sciences, Box 7023, 750 07, Uppsala, Sweden.

Department of Animal Biosciences, Swedish University of Agricultural Sciences, Box 7023, 750 07, Uppsala, Sweden; Department of Biochemistry and Biophysics, Stockholm University, Tomtebodavägen 23A, 171 65, Solna, Sweden.

出版信息

Poult Sci. 2024 Nov;103(11):104214. doi: 10.1016/j.psj.2024.104214. Epub 2024 Aug 13.

DOI:10.1016/j.psj.2024.104214
PMID:39190989
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11396056/
Abstract

Most commercial laying hens suffer from sternum (keel) bone damage including deviations and fractures. X-raying hens, followed by segmenting and assessing the keel bone, is a key to automating the monitoring of keel bone condition. The aim of the current work is to train a deep learning model to segment the keel bone out of whole-body x-ray images. We obtained full-body x-ray images of laying hens (n = 1,051) and manually drew the outline of the keel bone on each image. Using the annotated images, a U-net model was then trained to segment the keel bone. The proposed model was evaluated using 5-fold cross validation. We obtained high segmentation accuracy (Dice coefficients of 0.88-0.90) repeatably over several validation folds. In conclusion, automatic segmentation of the keel bone from full-body x-ray images is possible with good accuracy. Segmentation is a requirement for automated measurements of keel geometry and density, which can subsequently be connected to susceptibility to keel deviations and fractures.

摘要

大多数商业产蛋鸡都患有胸骨(龙骨)骨损伤,包括变形和骨折。对母鸡进行 X 光检查,然后对龙骨进行分段和评估,是实现龙骨状况自动监测的关键。本研究的目的是训练深度学习模型,以便从全身 X 光图像中分割出龙骨。我们获得了产蛋母鸡的全身 X 光图像(n=1051),并在每张图像上手动绘制了龙骨的轮廓。然后,使用标注图像训练 U-net 模型以分割龙骨。该模型使用 5 折交叉验证进行评估。我们在几个验证折中的重复结果都得到了很高的分割准确性(Dice 系数为 0.88-0.90)。总之,从全身 X 光图像中自动分割龙骨是可能的,并且具有良好的准确性。分割是对龙骨几何形状和密度进行自动测量的前提,这可以进一步与龙骨变形和骨折的易感性联系起来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3721/11396056/89845ae2abef/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3721/11396056/1c91cfcef469/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3721/11396056/89845ae2abef/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3721/11396056/1c91cfcef469/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3721/11396056/89845ae2abef/gr2.jpg

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1
Research Note: A deep learning method segments chicken keel bones from whole-body X-ray images.研究报告:深度学习方法从全身 X 射线图像中分割鸡的龙骨。
Poult Sci. 2024 Nov;103(11):104214. doi: 10.1016/j.psj.2024.104214. Epub 2024 Aug 13.
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