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一种类似于氮酶的酶参与了光合细菌中新型的亚硫酸盐(异丁烯酸盐)厌氧同化途径。

A nitrogenase-like enzyme is involved in the novel anaerobic assimilation pathway of a sulfonate, isethionate, in the photosynthetic bacterium .

机构信息

Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, Japan.

出版信息

mSphere. 2024 Sep 25;9(9):e0049824. doi: 10.1128/msphere.00498-24. Epub 2024 Aug 27.

Abstract

Prokaryotes contribute to the global sulfur cycle by using diverse sulfur compounds as sulfur sources or electron acceptors. In this study, we report that a nitrogenase-like enzyme (NFL) and a radical SAM enzyme (RSE) are involved in the novel anaerobic assimilation pathway of a sulfonate, isethionate, in the photosynthetic bacterium . The genes for NFL are localized at a locus containing genes for known sulfonate metabolism in the genome. A gene encoding an RSE is present just upstream of , forming a small gene cluster . Mutants lacking any genes are incapable of growing with isethionate as the sole sulfur source under anaerobic photosynthetic conditions, indicating that all four NflBHDK proteins are essential for the isethionate assimilation pathway. Heterologous expression of the genes encoding a known isethionate lyase that degrades isethionate to sulfite and acetaldehyde restored the isethionate-dependent growth of a mutant lacking , indicating that the enzyme encoding is involved in an isethionate assimilation reaction to release sulfite. Furthermore, the heterologous expression of and encoding an isethionate transporter in the closely related species , which does not have and cannot grow with isethionate as the sole sulfur source, conferred isethionate-dependent growth ability to this species. We propose to rename as (ethionate eductase). The genes are widely distributed among various prokaryote phyla. Discovery of the isethionate assimilation pathway by IsrBHDK provides a missing piece for the anaerobic sulfur cycle and for understanding the evolution of ancient sulfur metabolism.IMPORTANCENitrogenase is an important enzyme found in prokaryotes that reduces atmospheric nitrogen to ammonia and plays a fundamental role in the global nitrogen cycle. It has been noted that nitrogenase-like enzymes (NFLs), which share an evolutionary origin with nitrogenase, have evolved to catalyze diverse reactions such as chlorophyll biosynthesis (photosynthesis), coenzyme F biosynthesis (methanogenesis), and methionine biosynthesis. In this study, we discovered that an NFL with unknown function in the photosynthetic bacterium is a novel isethionate reductase (Isr), which catalyzes the assimilatory degradation of isethionate, a sulfonate, releasing sulfite used as the sulfur source under anaerobic conditions. Isr is widely distributed among various bacterial phyla, including intestinal bacteria, and is presumed to play an important role in sulfur metabolism in anaerobic environments such as animal guts and microbial mats. This finding provides a clue for understanding ancient metabolism that evolved under anaerobic environments at the dawn of life.

摘要

原核生物通过利用各种硫化合物作为硫源或电子受体来参与全球硫循环。在这项研究中,我们报告说,一种氮酶样酶 (NFL) 和一种自由基 S-腺苷甲硫氨酸酶 (RSE) 参与了光合细菌中一种磺酸盐异丁酸盐的新型厌氧同化途径。编码 NFL 的基因位于基因组中已知磺酸盐代谢基因的一个基因座上。一个编码 RSE 的基因位于 的上游,形成一个小的基因簇。缺乏任何 基因的突变体在厌氧光合条件下不能以异丁酸盐作为唯一的硫源生长,表明所有四个 NflBHDK 蛋白都是异丁酸盐同化途径所必需的。异源表达编码已知异丁酸盐裂解酶的 基因,该酶将异丁酸盐降解为亚硫酸盐和乙醛,恢复了缺乏 的突变体对异丁酸盐依赖的生长,表明编码 的酶参与异丁酸盐同化反应以释放亚硫酸盐。此外,在亲缘关系密切的物种 中异源表达 和编码异丁酸盐转运蛋白的 和 赋予了该物种异丁酸盐依赖的生长能力,而 没有 并且不能以异丁酸盐作为唯一的硫源生长。我们建议将 重新命名为 (乙酸盐引发酶)。 基因广泛分布于各种原核生物门中。通过 IsrBHDK 发现的异丁酸盐同化途径为厌氧硫循环和理解古代硫代谢的进化提供了一个缺失的环节。

重要性

氮酶是一种在原核生物中发现的重要酶,它将大气中的氮还原为氨,在全球氮循环中起着至关重要的作用。已经注意到,与氮酶具有进化起源的氮酶样酶 (NFLs) 已经进化为催化多种反应,如叶绿素生物合成 (光合作用)、辅酶 F 生物合成 (产甲烷作用) 和蛋氨酸生物合成。在这项研究中,我们发现,光合细菌 中具有未知功能的 NFL 是一种新型的异丁酸盐还原酶 (Isr),它催化异丁酸盐的同化降解,在厌氧条件下释放亚硫酸盐作为硫源。Isr 广泛分布于各种细菌门中,包括肠道细菌,据推测,它在动物肠道和微生物垫等厌氧环境中的硫代谢中发挥着重要作用。这一发现为理解在生命之初的厌氧环境中进化而来的古代代谢提供了线索。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e0ea/11423573/87ef29cc5490/msphere.00498-24.f001.jpg

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