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对接、分子动力学模拟和密度泛函理论计算:评估弗林蛋白酶中W254的功能和沙坦类药物结合情况。

Docking, MD Simulations, and DFT Calculations: Assessing W254's Function and Sartan Binding in Furin.

作者信息

Georgiou Nikitas, Mavromoustakos Thomas, Tzeli Demeter

机构信息

Laboratory of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis Zografou, 11571 Athens, Greece.

Laboratory of Physical Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimioupolis Zografou, 11571 Athens, Greece.

出版信息

Curr Issues Mol Biol. 2024 Jul 30;46(8):8226-8238. doi: 10.3390/cimb46080486.

Abstract

Furins are serine that are involved in many biological processes, where they play important roles in normal metabolism, in the activation of various pathogens, while they are a target for therapeutic intervention. Dichlorophenyl-pyridine "BOS" compounds are well known drugs that are used as inhibitors of human furin by an induced-fit mechanism, in which tryptophan W254 in the furin catalytic cleft acts as a molecular transition energy gate. The binding of "BOS" drug into the active center of furin has been computationally studied using the density functional theory (DFT) and ONIOM multiscaling methodologies. The binding enthalpies of the W254 with the furin-BOS is -32.8 kcal/mol ("open") and -18.8 kcal/mol ("closed"), while the calculated torsion barrier was found at 30 kcal/mol. It is significantly smaller than the value of previous MD calculations due to the relaxation of the environment, i.e., nearby groups of the W254, leading to the reduction of the energy demands. The significant lower barrier explains the experimental finding that the dihedral barrier of W254 is overcome. Furthermore, sartans were studied to evaluate their potential as furin inhibitors. Sartans are AT1 antagonists, and they effectively inhibit the hypertensive effects induced by the peptide hormone Angiotensin II. Here, they have been docked into the cavity to evaluate their effect on the BOS ligand via docking and molecular dynamics simulations. A consistent binding of sartans within the cavity during the simulation was found, suggesting that they could act as furin inhibitors. Finally, sartans interact with the same amino acids as W254, leading to a competitive binding that may influence the pharmacological efficacy and potential drug interactions of sartans.

摘要

弗林蛋白酶是丝氨酸蛋白酶,参与许多生物过程,在正常代谢、各种病原体的激活中发挥重要作用,同时也是治疗干预的靶点。二氯苯基吡啶“BOS”化合物是众所周知的药物,通过诱导契合机制用作人弗林蛋白酶的抑制剂,其中弗林蛋白酶催化裂隙中的色氨酸W254充当分子跃迁能量门。使用密度泛函理论(DFT)和ONIOM多尺度方法对“BOS”药物与弗林蛋白酶活性中心的结合进行了计算研究。W254与弗林蛋白酶 - BOS的结合焓为-32.8千卡/摩尔(“开放”)和-18.8千卡/摩尔(“关闭”),而计算出的扭转势垒为30千卡/摩尔。由于环境(即W254附近的基团)的松弛导致能量需求降低,该值明显小于先前分子动力学计算的值。显著较低的势垒解释了W254的二面角势垒被克服的实验发现。此外,对沙坦类药物进行了研究,以评估它们作为弗林蛋白酶抑制剂的潜力。沙坦类药物是AT1拮抗剂,它们有效地抑制肽激素血管紧张素II诱导的高血压作用。在此,通过对接和分子动力学模拟将它们对接至腔中,以评估它们对BOS配体的影响。在模拟过程中发现沙坦类药物在腔内持续结合,表明它们可以作为弗林蛋白酶抑制剂。最后,沙坦类药物与W254与相同的氨基酸相互作用,导致竞争性结合,这可能影响沙坦类药物的药理疗效和潜在的药物相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2e78/11352371/e0a848334e8c/cimb-46-00486-g001.jpg

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