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气候变化适应背景下的非洲本地猪遗传资源

African Local Pig Genetic Resources in the Context of Climate Change Adaptation.

作者信息

Pius Lenox, Huang Shuntao, Wanjala George, Bagi Zoltán, Kusza Szilvia

机构信息

College of Animal Science and Technology, Huazhong Agricultural University, Wuhan 430070, China.

Animal Breeding and Genetics Resource Section, Tanzania Livestock Research Institute (TALIRI), Dodoma 41207, Tanzania.

出版信息

Animals (Basel). 2024 Aug 19;14(16):2407. doi: 10.3390/ani14162407.

DOI:10.3390/ani14162407
PMID:39199941
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11350805/
Abstract

Africa is home to a wide diversity of locally adapted pig breeds whose genetic architecture offers important insights into livestock adaptation to climate change. However, the majority of these inherent traits have not been fully highlighted. This review presents an overview of the current state of African pig genetic resources, providing highlights on their population and production statistics, production system, population diversity indices, and genomic evidence underlying their evolutionary potential. The study results reveal an incomplete characterization of local pig genotypes across the continent. The characterized population, however, demonstrates moderate to high levels of genetic diversity, enough to support breeding and conservation programs. Owing to low genetic differentiation and limited evidence of distinct population structures, it appears that most local pig populations are strains within larger breeds. Genomic evidence has shown a higher number of selection signatures associated with various economically important traits, thus making them potential candidates for climate change adaptation. The reportedly early evidence of hybridization with wild suid groups further suggests untapped insights into disease resistance and resilience traits that need to be illuminated using higher-density markers. Nevertheless, gene introgression from commercial breeds is prevalent across Africa; thus, efforts to realize and utilize these traits must increase before they are permanently depleted.

摘要

非洲拥有多种适应当地环境的猪品种,其遗传结构为了解家畜对气候变化的适应性提供了重要见解。然而,这些固有特性中的大多数尚未得到充分凸显。本综述概述了非洲猪遗传资源的现状,重点介绍了其种群和生产统计数据、生产系统、种群多样性指数以及其进化潜力背后的基因组证据。研究结果表明,整个非洲大陆的本地猪基因型特征尚不完整。然而,已表征的种群显示出中等至高程度的遗传多样性,足以支持育种和保护计划。由于遗传分化程度低且缺乏明显种群结构的证据,大多数本地猪种群似乎是较大品种中的品系。基因组证据表明,与各种经济上重要的性状相关的选择信号数量较多,因此使其成为适应气候变化的潜在候选品种。据报道,与野生猪科群体杂交的早期证据进一步表明,对于抗病性和恢复力性状仍有未开发的见解,需要使用更高密度的标记来阐明。然而,商业品种的基因渗入在非洲各地普遍存在;因此,在这些特性永久耗尽之前,必须加大力度来认识和利用它们。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/c29ce7e1752a/animals-14-02407-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/d8e57fca6e1c/animals-14-02407-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/5dcfd94c14d4/animals-14-02407-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/c29ce7e1752a/animals-14-02407-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/d8e57fca6e1c/animals-14-02407-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/5dcfd94c14d4/animals-14-02407-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1d26/11350805/c29ce7e1752a/animals-14-02407-g003.jpg

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本文引用的文献

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Animals (Basel). 2024 Mar 4;14(5):792. doi: 10.3390/ani14050792.
2
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Anim Biosci. 2024 Apr;37(4):730-741. doi: 10.5713/ab.23.0342. Epub 2024 Feb 23.
3
Identification of Signatures of Positive Selection That Have Shaped the Genomic Landscape of South African Pig Populations.
塑造南非猪群基因组格局的正选择特征鉴定
Animals (Basel). 2024 Jan 12;14(2):236. doi: 10.3390/ani14020236.
4
- Invited Review - Current status of global pig production: an overview and research trends.特邀综述——全球生猪生产现状:概述与研究趋势
Anim Biosci. 2024 Apr;37(4):719-729. doi: 10.5713/ab.23.0367. Epub 2023 Nov 2.
5
Lost pigs of Angola: Whole genome sequencing reveals unique regions of selection with emphasis on metabolism and feed efficiency.安哥拉的失落猪种:全基因组测序揭示独特的选择区域,重点关注代谢和饲料效率。
Front Genet. 2022 Oct 24;13:1003069. doi: 10.3389/fgene.2022.1003069. eCollection 2022.
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Review of the Pig-Adapted African Swine Fever Viruses in and Outside Africa.非洲境内外猪适应性非洲猪瘟病毒综述
Pathogens. 2022 Oct 16;11(10):1190. doi: 10.3390/pathogens11101190.
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Within- and between-Breed Selection Signatures in the Original and Improved Valachian Sheep.原始和改良的瓦拉几亚绵羊品种内及品种间的选择印记
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