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与癌症患者临床结局相关的基因共表达分析:TCGA 数据分析。

Genes Co-Expressed with Influence Clinical Outcomes in Cancer Patients: TCGA Data Analysis.

机构信息

Department of Histology and Embryology, Doctoral School, Poznan University of Medical Sciences, Święcickiego 6 Street, 60-781 Poznań, Poland.

Department of Histology and Embryology, Poznan University of Medical Sciences, Święcickiego 6 Street, 60-781 Poznań, Poland.

出版信息

Int J Mol Sci. 2024 Aug 9;25(16):8707. doi: 10.3390/ijms25168707.

Abstract

ERβ has been assigned a tumor suppressor role in many cancer types. However, as conflicting findings emerge, ERβ's tissue-specific expression and functional role have remained elusive. There remains a notable gap in compact and comprehensive analyses of mRNA expression levels across diverse tumor types coupled with an exploration of its potential gene network. In this study, we aim to address these gaps by presenting a comprehensive analysis of transcriptomic data. We distinguished cancer types with significant changes in expression levels compared to corresponding healthy tissue and concluded that influences patient survival. Gene Set Enrichment Analysis (GSEA) distinguished molecular pathways affected by , including oxidative phosphorylation and epithelial-mesenchymal transition. Finally, we investigated genes displaying similar expression patterns as in tumor tissues, identifying potential co-expressed genes that may exert a synergistic effect on clinical outcomes, with significant results, including the expression of , , , and . Collectively, our results highlight the significant influence of mRNA expression on the transcriptomic landscape and the overall metabolism of cancerous cells across various tumor types.

摘要

ERβ 在许多癌症类型中被赋予了肿瘤抑制因子的角色。然而,随着相互矛盾的发现出现,ERβ 的组织特异性表达和功能作用仍然难以捉摸。在对不同肿瘤类型的 mRNA 表达水平进行紧凑和全面的分析,并探索其潜在的基因网络方面,仍然存在显著的差距。在这项研究中,我们旨在通过展示转录组数据的综合分析来解决这些差距。我们区分了与相应健康组织相比表达水平有显著变化的癌症类型,并得出结论,ERβ 影响患者的生存。基因集富集分析(GSEA)区分了受 ERβ 影响的分子途径,包括氧化磷酸化和上皮-间充质转化。最后,我们研究了在肿瘤组织中与 ERβ 表达模式相似的基因,确定了可能对临床结果产生协同作用的潜在共表达基因,具有显著意义的结果包括、、、和的表达。总之,我们的研究结果强调了 ERβ mRNA 表达对各种肿瘤类型的转录组图谱和癌细胞整体代谢的显著影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a5ac/11354723/7437bdefe43a/ijms-25-08707-g001.jpg

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