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异常表达的 tRNA-Val 片段可区分犬肝细胞癌与犬肝细胞腺瘤。

Aberrantly Expressed tRNA-Val Fragments Can Distinguish Canine Hepatocellular Carcinoma from Canine Hepatocellular Adenoma.

机构信息

Joint Graduate School of Veterinary Medicine, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan.

Joint Faculty of Veterinary Medicine, Kagoshima University, 1-21-24 Korimoto, Kagoshima 890-0065, Japan.

出版信息

Genes (Basel). 2024 Aug 4;15(8):1024. doi: 10.3390/genes15081024.

DOI:10.3390/genes15081024
PMID:39202384
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11353709/
Abstract

Hepatocellular adenoma (HCA) and hepatocellular carcinoma (HCC) can be difficult to differentiate but must be diagnosed correctly as treatment and prognosis for these tumors differ markedly. Relevant diagnostic biomarkers are thus needed, and those identified in dogs may have utility in human medicine because of the similarities between human and canine HCA and HCC. A tRNA-derived fragment (tRF), tRNA-Val, is a promising potential biomarker for canine mammary gland tumors but has not previously been investigated in hepatic tumors. Accordingly, we aimed to elucidate the potential utility of tRNA-Val as a biomarker for canine HCA and HCC using clinical samples (tumor tissue and plasma extracellular vesicles [EVs]) and tumor cell lines with qRT-PCR assays. We also investigated relevant functions and signaling pathways with bioinformatic analyses (Gene Ontology and Kyoto Encyclopedia of Genes and Genomes). tRNA-Val was markedly downregulated in HCC tumor tissue versus HCA tumor tissue and normal liver tissue, and a similar trend was shown in plasma EVs and HCC cell lines versus healthy controls. Based on areas under the receiver operating characteristic curves (AUCs), tRNA-Val significantly distinguished HCC (AUC = 1.00, = 0.001) from healthy controls in plasma EVs and HCC from HCA (AUC = 0.950, = 0.01). Bioinformatics analysis revealed that tRNA-Val may be primarily involved in DNA repair, mRNA processing, and splicing and may be linked to the N-glycan and ubiquitin-mediated proteasome pathways. This is the first report on the expression of tRNA-Val in canine HCC and HCA and its possible functions and signaling pathways. We suggest that tRNA-Val could be a promising novel biomarker to distinguish canine HCC from HCA. This study provides evidence for a greater understanding of the role played by tRNA-Val in the development of canine HCC.

摘要

肝细胞腺瘤(HCA)和肝细胞癌(HCC)难以区分,但必须正确诊断,因为这两种肿瘤的治疗和预后差异显著。因此,需要相关的诊断生物标志物,而在犬中鉴定出的生物标志物可能由于人 HCC 和犬 HCC 之间的相似性而在人类医学中具有应用价值。tRNA-Val 是一种有前途的潜在生物标志物,可用于犬乳腺肿瘤,但以前尚未在肝肿瘤中进行研究。因此,我们旨在使用 qRT-PCR 检测临床样本(肿瘤组织和血浆细胞外囊泡 [EVs])和肿瘤细胞系来阐明 tRNA-Val 作为犬 HCC 和 HCA 生物标志物的潜在用途。我们还通过生物信息学分析(基因本体论和京都基因与基因组百科全书)研究了相关功能和信号通路。tRNA-Val 在 HCC 肿瘤组织中相对于 HCA 肿瘤组织和正常肝组织明显下调,在血浆 EVs 和 HCC 细胞系相对于健康对照也显示出类似的趋势。基于受试者工作特征曲线(AUC)下的面积,tRNA-Val 可显著区分 HCC(AUC = 1.00, = 0.001)与健康对照的血浆 EVs 以及 HCC 与 HCA(AUC = 0.950, = 0.01)。生物信息学分析表明,tRNA-Val 可能主要参与 DNA 修复、mRNA 加工和剪接,并且可能与 N-聚糖和泛素介导的蛋白酶体途径有关。这是关于犬 HCC 和 HCA 中 tRNA-Val 表达及其可能的功能和信号通路的首次报道。我们认为 tRNA-Val 可能是一种有前途的新型生物标志物,可用于区分犬 HCC 与 HCA。本研究为进一步了解 tRNA-Val 在犬 HCC 发生中的作用提供了证据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/f538e1279d0b/genes-15-01024-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/10cb6e92929b/genes-15-01024-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/01c77c0d3218/genes-15-01024-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/64e210f1a72b/genes-15-01024-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/f538e1279d0b/genes-15-01024-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/10cb6e92929b/genes-15-01024-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/01c77c0d3218/genes-15-01024-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/64e210f1a72b/genes-15-01024-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2f59/11353709/f538e1279d0b/genes-15-01024-g004.jpg

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本文引用的文献

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UBA3 promotes the occurrence and metastasis of intrahepatic cholangiocarcinoma through MAPK signaling pathway.UBA3 通过 MAPK 信号通路促进肝内胆管癌的发生和转移。
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YRNA and tRNA fragments can differentiate benign from malignant canine mammary gland tumors.YRNA 和 tRNA 片段可区分良、恶性犬乳腺肿瘤。
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5'-tiRNA-Gln inhibits hepatocellular carcinoma progression by repressing translation through the interaction with eukaryotic initiation factor 4A-I.5'-tiRNA-Gln 通过与真核起始因子 4A-I 相互作用抑制翻译从而抑制肝癌进展。
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tRNA-derived small RNA 3'U-tRF promotes tumour migration and early progression in ovarian cancer.tRNA衍生的小RNA 3'U-tRF促进卵巢癌的肿瘤迁移和早期进展。
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