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新属、新种, 科内的一个新属,从韩国的微咸水中分离得到。

gen. nov., sp. nov., a Novel Genus within the Family , Was Isolated from Brackish Water in the Republic of Korea.

作者信息

Baek Kiwoon, Jang Sumin, Goh Jaeduk, Choi Ahyoung

机构信息

Biological Resources Research Department, Nakdonggang National Institute of Biological Resources (NNIBR), Sangju 37242, Republic of Korea.

出版信息

Microorganisms. 2024 Aug 14;12(8):1671. doi: 10.3390/microorganisms12081671.

Abstract

A Gram-stain-negative, obligately aerobic, non-motile, rod-shaped bacterial strain designated SJW1-29 was isolated from brackish water samples collected from the Seomjin River, Republic of Korea. The purpose of this study was to characterize strain SJW1-29 and determine its taxonomic position as a potential new genus within the family . The strain grew within the range of 10-30 °C (optimum, 25 °C), pH 5.0-10.0 (optimum, 7.0), and 1-4% NaCl (optimum, 3%). Phylogenetic analysis based on the 16S rRNA gene revealed that strain SJW1-29 belongs to the family and is closely related to Shu-9-SY12-35C (91.3% similarity), R491 (90.6%), and DMA-K-7a (90.0%), while the similarities to strains within the order were lower than 90.0%. The genome is 7.1 Mbp with a G+C content of 50.7 mol%. The use of genome-relatedness indices confirmed that this strain belongs to a new genus. The major polar lipid profile consisted of phosphatidylethanolamine, and MK-7 was the predominant menaquinone. The predominant fatty acids were summed feature 3 (C7 and/or C6), iso-C, iso-C 3-OH, and C, representing more than 80% of the total fatty acids. The phenotypic, chemotaxonomic, genetic, and phylogenetic properties suggest that strain SJW1-29 represents a novel species within a new genus in the family , for which the name gen. nov., sp. nov., is proposed. The type strain of is SJW1-29 (=KCTC 72493 = NBRC 114061 = FBCC-B16924).

摘要

从韩国蟾津江采集的微咸水样本中分离出一株革兰氏染色阴性、专性需氧、无运动性、杆状的细菌菌株,命名为SJW1-29。本研究的目的是对菌株SJW1-29进行特征描述,并确定其作为该科内一个潜在新属的分类地位。该菌株在10-30°C(最适温度25°C)、pH 5.0-10.0(最适pH 7.0)和1-4% NaCl(最适盐度3%)的范围内生长。基于16S rRNA基因的系统发育分析表明,菌株SJW1-29属于该科,与舒氏菌属Shu-9-SY12-35C(相似度91.3%)、R491(90.6%)和DMA-K-7a(90.0%)密切相关,而与该目内其他菌株的相似度低于90.0%。该基因组大小为7.1 Mbp,G+C含量为50.7 mol%。基因组相关性指数的分析证实该菌株属于一个新属。主要极性脂类成分包括磷脂酰乙醇胺,MK-7是主要的甲基萘醌。主要脂肪酸为总和特征3(C7和/或C6)、异-C、异-C 3-OH和C,占总脂肪酸的80%以上。表型、化学分类、遗传和系统发育特性表明,菌株SJW1-29代表了该科一个新属内的一个新物种,为此提议将其命名为[新属名]属([新属名] gen. nov.)、[新种名]种([新种名] sp. nov.)。[新属名]的模式菌株为SJW1-29(=KCTC 72493 = NBRC 114061 = FBCC-B16924)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/be47/11356934/41290d744e5d/microorganisms-12-01671-g001.jpg

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4
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5
Analysis of 1,000 Type-Strain Genomes Improves Taxonomic Classification of .
Front Microbiol. 2019 Sep 23;10:2083. doi: 10.3389/fmicb.2019.02083. eCollection 2019.
6
Editorial: Recent Advances in Bioremediation/Biodegradation by Extreme Microorganisms.
Front Microbiol. 2019 Aug 14;10:1851. doi: 10.3389/fmicb.2019.01851. eCollection 2019.
7
Arundinibacter roseus gen. nov., sp. nov., a new member of the family Cytophagaceae.
Int J Syst Evol Microbiol. 2019 Jul;69(7):2076-2081. doi: 10.1099/ijsem.0.003436. Epub 2019 May 17.
8
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
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