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中国优势蜱种中DNA病毒的病毒多样性及生态影响

Viral Diversity and Ecological Impact of DNA Viruses in Dominant Tick Species in China.

作者信息

Yan Yueyang, Shi Zhangpeng, Wang Cunmin, Jin Zi, Yin Jigang, Zhu Guan

机构信息

State Key Laboratory for Diagnosis and Treatment of Severe Zoonotic Infectious Diseases, Jilin University, Changchun 130062, China.

Institute of Zoonosis, Jilin University, Changchun 130062, China.

出版信息

Microorganisms. 2024 Aug 22;12(8):1736. doi: 10.3390/microorganisms12081736.

DOI:10.3390/microorganisms12081736
PMID:39203578
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11357538/
Abstract

Ticks are blood-feeding ectoparasites that also transmit various pathogens, posing severe risks to human and animal health. DNA viruses play a crucial role in the microbial ecology of ticks, but their distribution and ecological significance remain largely undetermined. Here, we assembled an extensive catalog encompassing 4320 viral operational taxonomic units (vOTUs) from six main dominant tick species in China, of which 94.8% have not been found in any other environment. To bridge the knowledge gap in tick DNA virus research and provide a crucial resource platform, we developed the Tick DNA Virus Database. This database includes the vOTUs that are known to cause diseases. Most of the predicted vOTUs are associated with dominant bacterial and archaeal phyla. We identified 105 virus-encoded putative auxiliary metabolic genes (AMGs) that are involved in host metabolism and environmental adaptation, potentially influencing ticks through both top-down and bottom-up mechanisms. The identification of microbial communities and antibiotic resistance in wild tick species suggests that wild ticks are reservoirs of antibiotic resistance and potential spreaders of antibiotic resistance. These findings reveal the potential role of tick viruses in ecosystems, highlighting the importance of monitoring tick microbiomes to address global public health challenges.

摘要

蜱是吸食血液的体外寄生虫,还会传播各种病原体,对人类和动物健康构成严重风险。DNA病毒在蜱的微生物生态中起着关键作用,但其分布和生态意义在很大程度上仍未确定。在这里,我们构建了一个广泛的目录,涵盖了来自中国六种主要优势蜱种的4320个病毒操作分类单元(vOTU),其中94.8%在任何其他环境中均未被发现。为了弥补蜱DNA病毒研究中的知识空白并提供一个关键的资源平台,我们开发了蜱DNA病毒数据库。该数据库包括已知会导致疾病的vOTU。大多数预测的vOTU与主要的细菌和古菌门相关。我们鉴定出105个病毒编码的假定辅助代谢基因(AMG),它们参与宿主代谢和环境适应,可能通过自上而下和自下而上的机制影响蜱。对野生蜱种中微生物群落和抗生素抗性的鉴定表明,野生蜱是抗生素抗性的储存库和抗生素抗性的潜在传播者。这些发现揭示了蜱病毒在生态系统中的潜在作用,突出了监测蜱微生物组以应对全球公共卫生挑战的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/a7a1364828cd/microorganisms-12-01736-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/d82ab6d4863f/microorganisms-12-01736-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/3a98c9b05e77/microorganisms-12-01736-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/7679b8d7c948/microorganisms-12-01736-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/9b4314c04a10/microorganisms-12-01736-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/a7a1364828cd/microorganisms-12-01736-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/d82ab6d4863f/microorganisms-12-01736-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/3a98c9b05e77/microorganisms-12-01736-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/7679b8d7c948/microorganisms-12-01736-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/9b4314c04a10/microorganisms-12-01736-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0523/11357538/a7a1364828cd/microorganisms-12-01736-g005.jpg

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本文引用的文献

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Virome diversity shaped by genetic evolution and ecological landscape of Haemaphysalis longicornis.长角血蜱的遗传进化和生态景观塑造的病毒组多样性。
Microbiome. 2024 Feb 21;12(1):35. doi: 10.1186/s40168-024-01753-9.
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Tick-Borne Co-Infections: Challenges in Molecular and Serologic Diagnoses.蜱传混合感染:分子诊断与血清学诊断面临的挑战
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Highly host-linked viromes in the built environment possess habitat-dependent diversity and functions for potential virus-host coevolution.高度宿主关联的建筑环境病毒组具有依赖于栖息地的多样性和功能,可用于潜在的病毒-宿主共同进化。
Nat Commun. 2023 May 9;14(1):2676. doi: 10.1038/s41467-023-38400-0.
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Benchmarking genome assembly methods on metagenomic sequencing data.基于宏基因组测序数据对基因组组装方法进行基准测试。
Brief Bioinform. 2023 Mar 19;24(2). doi: 10.1093/bib/bbad087.
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Ultra-small bacteria and archaea exhibit genetic flexibility towards groundwater oxygen content, and adaptations for attached or planktonic lifestyles.超小细菌和古菌对地下水中的氧含量表现出遗传适应性,并能适应附着或浮游的生活方式。
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DNA virome of ticks in the Northeast and Hubei provinces of China reveals diverse single-stranded circular DNA viruses.中国东北地区和湖北省蜱中的 DNA 病毒组揭示了多样化的单链环状 DNA 病毒。
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Metavirome of 31 tick species provides a compendium of 1,801 RNA virus genomes.31 种蜱物种的病毒组提供了 1801 个 RNA 病毒基因组汇编。
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