Department of Anatomy and Physiology, Faculty of Medicine, Dentistry and Health Sciences, The University of Melbourne, Melbourne, Australia.
Department of Surgery, Royal Melbourne Hospital, The University of Melbourne, Melbourne, Australia.
BMC Genomics. 2024 Aug 29;25(1):814. doi: 10.1186/s12864-024-10723-2.
The growth factor Neuregulin-1 (NRG1) has pleiotropic roles in proliferation and differentiation of the stem cell niche in different tissues. It has been implicated in gut, brain and muscle development and repair. Six isoform classes of NRG1 and over 28 protein isoforms have been previously described. Here we report a new class of NRG1, designated NRG1-VII to denote that these NRG1 isoforms arise from a myeloid-specific transcriptional start site (TSS) previously uncharacterized. Long-read sequencing was used to identify eight high-confidence NRG1-VII transcripts. These transcripts presented major structural differences from one another, through the use of cassette exons and alternative stop codons. Expression of NRG1-VII was confirmed in primary human monocytes and tissue resident macrophages and induced pluripotent stem cell-derived macrophages (iPSC-derived macrophages). Isoform switching via cassette exon usage and alternate polyadenylation was apparent during monocyte maturation and macrophage differentiation. NRG1-VII is the major class expressed by the myeloid lineage, including tissue-resident macrophages. Analysis of public gene expression data indicates that monocytes and macrophages are a primary source of NRG1. The size and structure of class VII isoforms suggests that they may be more diffusible through tissues than other NRG1 classes. However, the specific roles of class VII variants in tissue homeostasis and repair have not yet been determined.
神经调节蛋白 1(NRG1)是一种生长因子,在不同组织的干细胞龛中具有多效性的增殖和分化作用。它与肠道、大脑和肌肉的发育和修复有关。先前已经描述了 NRG1 的六种同工型类和超过 28 种蛋白质同工型。在这里,我们报告了一种新的 NRG1 类,称为 NRG1-VII,以表示这些 NRG1 同工型来自以前未被描述的髓系特异性转录起始位点(TSS)。长读测序用于鉴定出 8 种高可信度的 NRG1-VII 转录本。这些转录本彼此之间存在主要的结构差异,通过使用盒式外显子和选择性终止密码子。NRG1-VII 在原代人单核细胞和组织驻留巨噬细胞以及诱导多能干细胞衍生的巨噬细胞(iPSC 衍生的巨噬细胞)中得到证实。在单核细胞成熟和巨噬细胞分化过程中,通过盒式外显子的使用和交替多聚腺苷酸化实现了同种型转换。NRG1-VII 是髓系表达的主要类,包括组织驻留巨噬细胞。对公共基因表达数据的分析表明,单核细胞和巨噬细胞是 NRG1 的主要来源。VII 类同工型的大小和结构表明,它们可能比其他 NRG1 类更易在组织中扩散。然而,VII 类变体在组织稳态和修复中的具体作用尚未确定。