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探索柠檬色瘤胃球菌 CW28 菊粉蔗糖酶催化腔中残基的作用。

Exploring the role of the residues into catalytic cavity of inulosucrase from Leuconostoc citreum CW28.

机构信息

Departamento de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad #2001, Col. Chamilpa, 62210 Cuernavaca, Morelos, Mexico.

Departamento de Bioquímica, Facultad de Medicina, Universidad Nacional Autónoma de México, Av. Universidad #3000, 04510, Mexico.

出版信息

Int J Biol Macromol. 2024 Nov;279(Pt 3):135159. doi: 10.1016/j.ijbiomac.2024.135159. Epub 2024 Aug 29.

Abstract

Inulosucrases are enzymes capable of synthesizing inulin polymers using sucrose as the main substrate. The enzymatic activity relies on the catalytic triad within the active site and residues responsible for substrate recognition and orientation, termed carbohydrate-binding subsites. This study investigates the role of specific residues within the catalytic cavity of a truncated version of IslA4 in enzymatic catalysis. Mutants at residues S425, L499, A602, R618, F619, Y676, Y692, and R696 were constructed and characterized. Characterization results, and in silico structural comparison with other fructansucrases, reveal these residues' functional significance in catalysis. Residue S425 belongs to subsite -1; residues R618 and Y692 are part of subsite +1, and residue R696 belongs to subsites +1 and +2. Residues L499 and A602 are support residues; the former favors the formation of the fructosyl-enzyme intermediate, while the latter stabilizes the acid/base catalyst during catalysis. Residues Y676 and F619 may participate in stabilizing residues at -1/+1 subsites. This study represents the first comprehensive exploration of the structural determinants essential for enzymatic function in the inulosucrase of Leuconostoc citreum, and proposes the identity of residues involved in the -1 to +2 subsites.

摘要

菊粉蔗糖酶能够以蔗糖为主要底物合成菊粉聚合物。该酶的活性依赖于活性部位内的催化三联体和负责底物识别和定向的残基,称为碳水化合物结合亚基。本研究探讨了特定残基在截短版本的 IslA4 催化腔内对酶催化的作用。构建并表征了 S425、L499、A602、R618、F619、Y676、Y692 和 R696 残基的突变体。表征结果和与其他果聚糖蔗糖酶的计算结构比较揭示了这些残基在催化中的功能意义。残基 S425 属于 -1 亚基;残基 R618 和 Y692 是 +1 亚基的一部分,而残基 R696 属于 +1 和 +2 亚基。残基 L499 和 A602 是支持残基;前者有利于果糖基-酶中间产物的形成,而后者在催化过程中稳定酸碱催化剂。残基 Y676 和 F619 可能参与稳定 -1 和 +1 亚基的残基。本研究首次全面探讨了与植物乳杆菌菊粉蔗糖酶酶功能相关的结构决定因素,并提出了参与 -1 到 +2 亚基的残基的身份。

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